1 5' 3' | 2 5' 3' | 3 5' 3' |
...ataatgttccatcttttgagtctattttggttgggaaaaaaattgctgtgatggaaactaaactgctggagcatgctaaatttctttttacctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTGAATTCGTTGCGATCGAGGAACCTATCGTCAAGGTTAGGCTTACGGGCC
species | Oryza sativa |
transcript | LOC_Os11g07916.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATANCCTTTCTGGCACAGGAGGTGGTGAGCTEST: gi|86258572|gb|CI064925.1|CI064925
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATA-CCTTTCTGGCACAGGAGGTGGTGAGCT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|88998301|gb|CI038186.1|CI038186
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|88832583|gb|CI008179.1|CI008179
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|86537734|gb|CI177940.1|CI177940
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|86545098|gb|CI185304.1|CI185304
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: CCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|86258573|gb|CI064926.1|CI064926
genomic: CCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|88205239|gb|CI205088.1|CI205088
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|86864550|gb|CI344155.1|CI344155
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|86511242|gb|CI153875.1|CI153875
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|88218879|gb|CI216877.1|CI216877
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|88215591|gb|CI215440.1|CI215440
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|13806859|gb|AU181705.1|AU181705
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTNTGGCACAGGAGGTGGTGAGCTTEST: gi|88278998|gb|CI399998.1|CI399998
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: CCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCAATGAGATTAGNCCATACCTTTCTGGCACACGAGGTGGTGAGCTTEST: gi|86531069|gb|CI171275.1|CI171275
genomic: CCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|87027922|gb|CI276278.1|CI276278
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|87032192|gb|CI261974.1|CI261974
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|86855056|gb|CI263123.1|CI263123
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|88988204|gb|CI036174.1|CI036174
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|86507179|gb|CI149812.1|CI149812
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|89163879|gb|CI100967.1|CI100967
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTEST: gi|109712798|gb|CI105406.1|CI105406
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
EST: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAG GTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
genomic: TTGCTGATGAGGAGACTGGCCTTGAGTTGAACCAGGAGAATATTGAAAAGgtacttgctt ... cctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTT
ctgtgatggaaactaaactgctggagcatgctaaatttctttttacctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTGAATTCGTTGCGATCGAGGAACCTATCGTCAAGGTTAGGCTTACGGGCC
tgctaaa putative branch site (score: 45)
tttctttttaccttta CT-rich tract
taaatttctttttacc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatgttccatcttttgagtctattttggttgggaaaaaaattgctgtgatggaaactaaactgctggagcatgctaaatttctttttacctttattagGTACTCGATGAGATTAGGCCATACCTTTCTGGCACAGGAGGTGGTGAGCTTGAATTCGTTGCGATCGAGGAACCTATCGTCAAGGTTAGGCTTACGGGCC
- - - - - -tcttttg
- - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - ttgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcatgc