1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttcaacaatgaatattattgatttataggattcttgagatcgatttggttttgctagagattctattgacttatgctggatatgtttgtgtattttcagGGTCGTGGAGGACCTGGAATGGCATCCAGTGTTG
species | Oryza sativa |
transcript | LOC_Os11g07490.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGAAACAGAGAAAAG GGTCGTGGAGGACCTGGAATGGCATCCAGTGTTG
genomic: CAGAAACAGAGAAAAGgtcgaagatc ... gtattttcagGGTCGTGGAGGACCTGGAATGGCATCCAGTGTTG
ttggttttgctagagattctattgacttatgctggatatgtttgtgtattttcagGGTCGTGGAGGACCTGGAATGGCATCCAGTGTTG
tattgac putative branch site (score: 12)
tattttc putative PPT
attctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcaacaatgaatattattgatttataggattcttgagatcgatttggttttgctagagattctattgacttatgctggatatgtttgtgtattttcagGGTCGTGGAGGACCTGGAATGGCATCCAGTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- -caacaat
- - - - - - - - - - - - - - - attcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt