1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttttgtttcttccatgctcttccaataattccaagttctctctagaactgaataatggttgtctgaaactcaattcgttccccggattgttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTGGCAGATTGTTTATGCAAGATGGTAGAGGTGGCAGATTATCTGTGACTAC
species | Oryza sativa |
transcript | LOC_Os11g06410.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTGEST: gi|88411369|gb|CI518893.1|CI518893
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTGEST: gi|89185091|gb|CI049637.1|CI049637
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTGEST: gi|9864879|gb|AU100629.1|AU100629
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST: TGCTAATCATCCANGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTGEST: gi|88478444|gb|CI415715.1|CI415715
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTGEST: gi|89185434|gb|CI051762.1|CI051762
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTGEST: gi|3761970|gb|C99218.1|C99218
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
gaactgaataatggttgtctgaaactcaattcgttccccggattgttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTGGCAGATTGTTTATGCAAGATGGTAGAGGTGGCAGATTATCTGTGACTAC
tgttaat putative branch site (score: 3)
attgttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgtttcttccatgctcttccaataattccaagttctctctagaactgaataatggttgtctgaaactcaattcgttccccggattgttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTGGCAGATTGTTTATGCAAGATGGTAGAGGTGGCAGATTATCTGTGACTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT