1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cacaatgatcttccatggttcacttatctgcattgcacctggattgtgtattttaattatactgctttggagatcttatgcaatagttttactgttgtagGTTGCTGCTGAGATGAGTTATCAGTTCAGAGTTGGCATTCAG
species | Oryza sativa |
transcript | LOC_Os11g06010.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCAATGGATCATCCATGGTACTGCCAATGATCACGGGATTCCCTCCGAG GTTGCTGCTGAGATGAGTTATCAGTTCAGAGTTGGCATTCAGEST: gi|58652868|gb|CK041548.1|CK041548
genomic: ATCAATGGATCATCCATGGTACTGCCAATGATCACGGGATTCCCTCCGAGgtagcacctc ... actgttgtagGTTGCTGCTGAGATGAGTTATCAGTTCAGAGTTGGCATTCAG
EST: ATCAATGGATCATCCATGGTACTGCCAATGATCACGGGATTCCCTCCGAG GTTGCTGCTGAGATGAGTTATCAGTTCAGAATTGGCGATTCAG
genomic: ATCAATGGATCATCCATGGTACTGCCAATGATCACGGGATTCCCTCCGAGgtagcacctc ... actgttgtagGTTGCTGCTGAGATGAGTTATCAGTTCAGAGTTGGC-ATTCAG
gtgtattttaattatactgctttggagatcttatgcaatagttttactgttgtagGTTGCTGCTGAGATGAGTTATCAGTTCAGAGTTGGCATTCAG
ttttaat putative branch site (score: 5)
ttttact putative PPT
ttttaattatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacaatgatcttccatggttcacttatctgcattgcacctggattgtgtattttaattatactgctttggagatcttatgcaatagttttactgttgtagGTTGCTGCTGAGATGAGTTATCAGTTCAGAGTTGGCATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - ttccatg
- - - - - - - - - - - - - - - cattgca
- - - - - - - - - - - - - - - - - - -cctggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgca