1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtagcctgttaatatctgaacttactgtagaaaatatggaaaataatgcatatatagtcttttgaaccgtagtttactaagatcaatcaacaatttgcagCTATTTGCACTATGGCGGTTTTGCTTCTCGCGTGCAGATCCTGGAGAGAAAGGATGGACCATTTAGCAACTGCATGCTGCGCGGATTCAGTG
species | Oryza sativa |
transcript | LOC_Os11g03230.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGGACTCAGACTTATTGGAGATGAACAGGCGAACCAGATTCTTGAAGCG CTATTTGCACTATGGCGGTTTTGCTTCTCGCGTGCEST: gi|38479989|gb|CF964078.1|CF964078
genomic: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAAATTCTTGAAGCGgtacgtgcaa ... caatttgcagCTATTTGCACTATGGCGGTTTTGCTTCTCGCGTGC
EST: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCG CTATTTGCACTATGGCGGTTTTGCTTCTCGCGTGCAGATCCTGGAGAGAAAEST: gi|4715905|gb|AU057021.1|AU057021
genomic: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAAATTCTTGAAGCGgtacgtgcaa ... caatttgcagCTATTTGCACTATGGCGGTTTTGCTTCTCGCGTGCAGATCCTGGAGAGAAA
EST: CGGNACTCAGACTTATTGGAGATGAAAAGGCGAACCAAATTCTTGAAGCG CTATTTGCACTATGGCGGTTTTGCTTCTCGCGTGCAGATCCTGGAGAGAAA
genomic: CGG-ACTCAGACTTATTGGAGATGAAAAGGCGAACCAAATTCTTGAAGCGgtacgtgcaa ... caatttgcagCTATTTGCACTATGGCGGTTTTGCTTCTCGCGTGCAGATCCTGGAGAGAAA
atgcatatatagtcttttgaaccgtagtttactaagatcaatcaacaatttgcagCTATTTGCACTATGGCGGTTTTGCTTCTCGCGTGCAGATCCTGGAGAGAAAGGATGGACCATTTAGCAACTGCATGCTGCGCGGATTCAGTG
tatatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcctgttaatatctgaacttactgtagaaaatatggaaaataatgcatatatagtcttttgaaccgtagtttactaagatcaatcaacaatttgcagCTATTTGCACTATGGCGGTTTTGCTTCTCGCGTGCAGATCCTGGAGAGAAAGGATGGACCATTTAGCAACTGCATGCTGCGCGGATTCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC