1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatgctcaactatattttttttcttgtacattgtggtgaaattgtattcgagagtaggaaatttcctgacattgtctgtgcttttcatttttcttctcagGGACAGCTACTCCACTATCGTGGGCTACTAGGATGTCGATTGCATTAGGAGCTGCCAAAGGGTTAGCTTGCCTCCACAATGCTGAAAGGCCAATTATCTA
species | Oryza sativa |
transcript | LOC_Os11g02830.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAA GGACAGCTACTCCACTATCCTGGGCTACTAGGATGTCGGTTGCATTAGGGGEST: gi|25799597|gb|CA755558.1|CA755558
genomic: TGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaagaatcc ... ttcttctcagGGACAGCTACTCCACTATCGTGGGCTACTAGGATGTCGATTGCATTAGGAG
EST: TGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAA GGACAGCTACTCCACTATCGTGGGCTACTAGGATGTCGATTGCATTAGGAGEST: gi|5443728|gb|D22444.2|D22444
genomic: TGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaagaatcc ... ttcttctcagGGACAGCTACTCCACTATCGTGGGCTACTAGGATGTCGATTGCATTAGGAG
EST: TGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAA GGACAGCTACTCCACTATCCTGGGCTACTAGGATGTCGATTGCATTAGGGGEST: gi|88300985|gb|CI592165.1|CI592165
genomic: TGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaagaatcc ... ttcttctcagGGACAGCTACTCCACTATCGTGGGCTACTAGGATGTCGATTGCATTAGGAG
EST: TGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAA GGACAGCTACTCCACTATCEST: gi|313081121|gb|HO213707.1|HO213707
genomic: TGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaagaatcc ... ttcttctcagGGACAGCTACTCCACTATC
EST: ACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAA GGACAGCTACTCCACTATCCTGGGCTACTAGGATGTCGGTTGCATTAGGGGEST: gi|86831126|gb|CI295603.1|CI295603
genomic: ACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaagaatcc ... ttcttctcagGGACAGCTACTCCACTATCGTGGGCTACTAGGATGTCGATTGCATTAGGAG
EST: TGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAA GGACAGCTACTCCACTATCCTGGGCTACTAGGATGTCGATTGCATTAGGGG
genomic: TGTGTACGAGTTCATGTTTCGAGGAAGTCTAGAAAACCACTTATTCCGAAgtaagaatcc ... ttcttctcagGGACAGCTACTCCACTATCGTGGGCTACTAGGATGTCGATTGCATTAGGAG
attcgagagtaggaaatttcctgacattgtctgtgcttttcatttttcttctcagGGACAGCTACTCCACTATCGTGGGCTACTAGGATGTCGATTGCATTAGGAGCTGCCAAAGGGTTAGCTTGCCTCCACAATGCTGAAAGGCCAATTATCTA
tcctgac putative branch site (score: 18)
ttgtctgtgcttttca CT-rich tract
ttttcatttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgctcaactatattttttttcttgtacattgtggtgaaattgtattcgagagtaggaaatttcctgacattgtctgtgcttttcatttttcttctcagGGACAGCTACTCCACTATCGTGGGCTACTAGGATGTCGATTGCATTAGGAGCTGCCAAAGGGTTAGCTTGCCTCCACAATGCTGAAAGGCCAATTATCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- tgctcaa
- - - - - - - - - -tttcttg
- - - - - - - - - - - - - - - -tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgaca