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...ttctctcagaaaaggaagaatgaactagcaatagatatttatattatgttcattttcagcgtatacagatatattaataacgtagcttatcattgtgcagAGTGATGTAGTTTCCCATGCAAGAGAGGAGATCAACAAGCTGAGGCATGTAAATGAAGACCTTACCAAGCAAGTAGAAGGCCTACAAATGAACAGATTCA
species | Oryza sativa |
transcript | LOC_Os11g01439.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAGGGATCTCATCGTAAAGCTGGATGCAGCACAAGGAAAAATAACAGAG AGTGATGTAGTTTCCCATGCAAGAGAGGAGATCAACAAGCTGAGGCATGCAEST: gi|29645999|gb|CB651006.1|CB651006
genomic: AAAGGGATCTCATCGTTAAGCTGGATGCAGCACAAGGAAAAATAACAGAGgtatgatatt ... cattgtgcagAGTGATGTAGTTTCCCATGCAAGAGAGGAGATCAACAAGCTGAGGCATGTA
EST: CAAGGGATCTCATCGTTAAGCTGGATGCAGCACAAGGAAAAATAACAGAG AGTGATGTAGTTTCCCATGCAAGAGAGGAGATCAACAAGCTGAGGCATGTAEST: gi|29668094|gb|CB664369.1|CB664369
genomic: AAAGGGATCTCATCGTTAAGCTGGATGCAGCACAAGGAAAAATAACAGAGgtatgatatt ... cattgtgcagAGTGATGTAGTTTCCCATGCAAGAGAGGAGATCAACAAGCTGAGGCATGTA
EST: AAAGGGATCTCATCGTTAAGCTGGATGCAGCACAAGGAAAAATAACAGAG AGTGATGTAGTTTCCCATGCAAGAGAGGAGATCAACAAGCTGAGGCATGTA
genomic: AAAGGGATCTCATCGTTAAGCTGGATGCAGCACAAGGAAAAATAACAGAGgtatgatatt ... cattgtgcagAGTGATGTAGTTTCCCATGCAAGAGAGGAGATCAACAAGCTGAGGCATGTA
atgttcattttcagcgtatacagatatattaataacgtagcttatcattgtgcagAGTGATGTAGTTTCCCATGCAAGAGAGGAGATCAACAAGCTGAGGCATGTAAATGAAGACCTTACCAAGCAAGTAGAAGGCCTACAAATGAACAGATTCA
taataac putative branch site (score: 1)
tatacagatatattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctctcagaaaaggaagaatgaactagcaatagatatttatattatgttcattttcagcgtatacagatatattaataacgtagcttatcattgtgcagAGTGATGTAGTTTCCCATGCAAGAGAGGAGATCAACAAGCTGAGGCATGTAAATGAAGACCTTACCAAGCAAGTAGAAGGCCTACAAATGAACAGATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG