1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgacattttcctttcttaacacttggcatataatacaatccacaccattcctatgaattatgagctctttcttgacgtatgttttctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG
species | Oryza sativa |
transcript | LOC_Os11g01420.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCGTTCATCTGGTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATAGTGGACTGTTCTTTACTAATCTTCCAAGAGEST: gi|27548175|gb|CA767467.2|CA767467
genomic: GGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAG
EST: GGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATEST: gi|66915344|gb|CX102192.1|CX102192
genomic: GGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
EST: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
genomic: GGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
cacaccattcctatgaattatgagctctttcttgacgtatgttttctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG
tcttgac putative branch site (score: 23)
tgttttct putative PPT
tatgaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacattttcctttcttaacacttggcatataatacaatccacaccattcctatgaattatgagctctttcttgacgtatgttttctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG