1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttacagatccacgttgctttatttaattagcacgcacattttggtttcagaaacacttttcttgcgttgtaaattcctctcttcttttgtaaactcgcagATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGGTTTACATATATGTATAAATAATTTATTATGAGGCAGCAA
species | Oryza sativa |
transcript | LOC_Os10g42940.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAATTGAGGCCCCTTATGGAGGCACTACTTCAACCACACCCGATGCTCTG ATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAEST: gi|88430649|gb|CI596763.1|CI596763
genomic: AAATTGAGGCCC-TTATGGAGGCACTACTTCAACAACACC-GATGCTCTGgtcactcttt ... aaactcgcagATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGA
EST: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTG ATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAEST: gi|88738429|gb|CI761937.1|CI761937
genomic: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGgtcactcttt ... aaactcgcagATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGA
EST: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTG ATCTACGTAGTTGATTCCCTGGATAGAEST: gi|88761917|gb|CI771473.1|CI771473
genomic: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGgtcactcttt ... aaactcgcagATCTACGTAGTTGATTCCCTGGATAGA
EST: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTG ATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTEST: gi|88765119|gb|CI774225.1|CI774225
genomic: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGgtcactcttt ... aaactcgcagATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCT
EST: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTG ATCTACGTAGTTGATTCCCTGEST: gi|88405972|gb|CI591367.1|CI591367
genomic: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGgtcactcttt ... aaactcgcagATCTACGTAGTTGATTCCCTG
EST: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTG ATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAEST: gi|218479927|gb|FG968408.1|FG968408
genomic: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGgtcactcttt ... aaactcgcagATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGA
EST: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTG ATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAEST: gi|33811779|gb|CF331776.1|CF331776
genomic: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGgtcactcttt ... aaactcgcagATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGA
EST: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTG ATCTACGTAGTTGATTCCCTGGATAGAGAGAGEST: gi|29666832|gb|CB663107.1|CB663107
genomic: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGgtcactcttt ... aaactcgcagATCTACGTAGTTGATTCCCTGGATAGAGAGAG
EST: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTG ATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTEST: gi|88743152|gb|CI766660.1|CI766660
genomic: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGgtcactcttt ... aaactcgcagATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCT
EST: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTG ATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTEST: gi|88574643|gb|CI666412.1|CI666412
genomic: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGgtcactcttt ... aaactcgcagATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCT
EST: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTG ATCTACGTAGTTGATTCEST: gi|88426529|gb|CI579358.1|CI579358
genomic: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGgtcactcttt ... aaactcgcagATCTACGTAGTTGATTC
EST: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTG ATCTACGTAGTTGATTCCCTGGATAGAGAGAGGA
genomic: AAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGgtcactcttt ... aaactcgcagATCTACGTAGTTGATTCCCTGGATAGAGAGAGGA
ttcagaaacacttttcttgcgttgtaaattcctctcttcttttgtaaactcgcagATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGGTTTACATATATGTATAAATAATTTATTATGAGGCAGCAA
ttcctctcttcttttg CT-rich tract
ttgtaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacagatccacgttgctttatttaattagcacgcacattttggtttcagaaacacttttcttgcgttgtaaattcctctcttcttttgtaaactcgcagATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGGTTTACATATATGTATAAATAATTTATTATGAGGCAGCAA
- - -gatccac
- - - - - - gttgctt
- - - - - - - - - - - - - - -gcacgca
- - - - - - - - - - - - - - - - - - - - - - - - agaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttgc