1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...catcaactctaagatcaaaattttaaaattcaaattttagcgtgcaacctagtttactccattatattaatttctctaacgttcaatataattctcacagGTTACCATCTGGTGTCAAGAAAGTGCTACACCCAATCATCTGTTGTGCACTTTCTGCAGATTTGGCGGCAGTAGCATATGGGTATCTCTCCCGGTCTGGA
species | Oryza sativa |
transcript | LOC_Os10g42780.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTCCTTTCTTGCTTGCTTCCACTGTTTTCGGTTACATCCTTGGTTCCCG GTTACCATCTGGTGTCAAGAAAGTGCTACACCCAATCATCTGTTGTGCACTEST: gi|29676078|gb|CB672353.1|CB672353
genomic: CTTCCTTTCTTGCTTGCTTCCACTGTTTTCGGTTACATCCTTGGTTCCCGgtactactcc ... attctcacagGTTACCATCTGGTGTCAAGAAAGTGCTACACCCAATCATCTGTTGTGCACT
EST: CTTCCTTTCTTGCTTGCTTCCACTGTTTTCGGTTACATCCTTGGTTCCCG GATACCATCTGGTGTCAAGAAAGTGC
genomic: CTTCCTTTCTTGCTTGCTTCCACTGTTTTCGGTTACATCCTTGGTTCCCGgtactactcc ... attctcacagGTTACCATCTGGTGTCAAGAAAGTGC
aacctagtttactccattatattaatttctctaacgttcaatataattctcacagGTTACCATCTGGTGTCAAGAAAGTGCTACACCCAATCATCTGTTGTGCACTTTCTGCAGATTTGGCGGCAGTAGCATATGGGTATCTCTCCCGGTCTGGA
ctctaac putative branch site (score: 2)
ttctcac putative PPT
tttactccattatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcaactctaagatcaaaattttaaaattcaaattttagcgtgcaacctagtttactccattatattaatttctctaacgttcaatataattctcacagGTTACCATCTGGTGTCAAGAAAGTGCTACACCCAATCATCTGTTGTGCACTTTCTGCAGATTTGGCGGCAGTAGCATATGGGTATCTCTCCCGGTCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT