1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgctctctgcatatccgattgagttagagcttcatcttcttaacaaaccatagccctgatttgaattgcgttgccaacaatgaaatatacccaaatacccagtgaatttcaattacaaagtgtccatccttttctcctcaagtaaattgaaaattctgtactaacaacttttgccatttgttccagCCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTGCCACCAGTGACTGAGAACAGTACAGCAAAGAGCAAATCTCATACTTCAC
species | Oryza sativa |
transcript | LOC_Os10g42420.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCCTGGAAATAAGACCGGTGGACTTGGTGCACGGAAACTTACGTCAAAG CCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTGEST: gi|58601898|gb|CK012426.1|CK012426
genomic: AGCCTGGAAATAAGACCGGTGGACTTGGTGCACGGAAACTTACGTCAAAGgtatgctctc ... tttgttccagCCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTG
EST: CTGGAAATAAGACCGGTGGACTTGGTGCACGGAAACTTACGTCAAAG CCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTGEST: gi|33794623|gb|CF323198.1|CF323198
genomic: CTGGAAATAAGACCGGTGGACTTGGTGCACGGAAACTTACGTCAAAGgtatgctctc ... tttgttccagCCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTG
EST: AGCCTGGAAATAAGACCGGTGGACTTGGTGCACGGAAACTTACGTCAAAG CCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTGEST: gi|1631820|gb|C19549.1|C19549
genomic: AGCCTGGAAATAAGACCGGTGGACTTGGTGCACGGAAACTTACGTCAAAGgtatgctctc ... tttgttccagCCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTG
EST: AGCCTGGAAATAAGACCGGTGGACTTGGTGCACGGAAACTTACGTCAAAG CCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTGEST: gi|66924302|gb|CX111150.1|CX111150
genomic: AGCCTGGAAATAAGACCGGTGGACTTGGTGCACGGAAACTTACGTCAAAGgtatgctctc ... tttgttccagCCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTG
EST: AGCCTGGAAATAAGACCGGTGGACTTGGTGCACGGAAACTTACGTCAAAG CCAAATGAAAGTCTCTATGAGCAGAAACCTGAAGAGCTAGEST: gi|58695054|gb|CK083741.1|CK083741
genomic: AGCCTGGAAATAAGACCGGTGGACTTGGTGCACGGAAACTTACGTCAAAGgtatgctctc ... tttgttccagCCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAG
EST: AGCCTGGAAATAAGACCGGTGGACTTGGTGCACGGAAACTTACGTCAAAG CCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTGEST: gi|117230026|gb|CT846403.1|CT846403
genomic: AGCCTGGAAATAAGACCGGTGGACTTGGTGCACGGAAACTTACGTCAAAGgtatgctctc ... tttgttccagCCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTG
EST: AGCCTGGAAATAAGACCGGTGGACTTGGTGCACGGAAACTTACGTCAAAG CCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTGEST: gi|27334422|gb|CA882873.1|CA882873
genomic: AGCCTGGAAATAAGACCGGTGGACTTGGTGCACGGAAACTTACGTCAAAGgtatgctctc ... tttgttccagCCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTG
EST: AGCCTGGAAATAAGACCGGTGGACTTGGTGCACGGAAACTTACGTCAAAG CCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTG
genomic: AGCCTGGAAATAAGACCGGTGGACTTGGTGCACGGAAACTTACGTCAAAGgtatgctctc ... tttgttccagCCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTG
ttctcctcaagtaaattgaaaattctgtactaacaacttttgccatttgttccagCCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTGCCACCAGTGACTGAGAACAGTACAGCAAAGAGCAAATCTCATACTTCAC
tactaac putative branch site (score: 38)
tttgttcc putative PPT
aagtaaattgaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctctctgcatatccgattgagttagagcttcatcttcttaacaaaccatagccctgatttgaattgcgttgccaacaatgaaatatacccaaatacccagtgaatttcaattacaaagtgtccatccttttctcctcaagtaaattgaaaattctgtactaacaacttttgccatttgttccagCCAAATGAAAGTCTCTATGAGCAGAAGCCTGAAGAGCTAGCTCCTGCGCTGCCACCAGTGACTGAGAACAGTACAGCAAAGAGCAAATCTCATACTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA