Sequence
atgc intronic sequence ATGC exonic sequencegttggctacttggctacttgttttactttgctctctgaggtttgtttttctttcagtactgtcattgactattctttctctattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGAATTCCAGGAATTTCAGAAATAATGATGACAGTAGCCTGTCAAAATTAGT
Basic information
species | Oryza sativa |
transcript | LOC_Os10g41590.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os10g41590.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G341271_T05 (Zea mays), 3'ss of exon 4
gttggctacttggctacttgttttactttgctctctgaggtttgtttttcttt--cagtactgtcatt------gactattctttctctattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGAATTCCAGGAATTTCAGAAATAATGATGACAGTAGCCTGTCAAAATTAGT
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----gttgcg-acaaatttggttaacgttgccttttaaggttcaattcatttcagcagtgatgcttttttagctgattgtttactcattgttccacagAATCTTTGGAGTCGTGTCCTTCCGAGGAGATATTTCTCTTAAGGCTCTTGAAGACAAACAACATCAGAGATAATAGTGACACTAGCTTGTTGAAATTTGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|2312286|gb|C28441.1|C28441EST: TGGGGATTTAAACGNTTTGCAAGCGCTTGATCATGTAGAGATGTCAGAAG NATCTCTTGAGTCATGTCCTTCTGAGGA
genomic: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGgttggctact ... tattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaggtttgtttttctttcagtactgtcattgactattctttctctattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGAATTCCAGGAATTTCAGAAATAATGATGACAGTAGCCTGTCAAAATTAGT
cattgac putative branch site (score: 3)
ctattctttctctatt CT-rich tract
tttgttttt TA-rich tract