1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gttggctacttggctacttgttttactttgctctctgaggtttgtttttctttcagtactgtcattgactattctttctctattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGAATTCCAGGAATTTCAGAAATAATGATGACAGTAGCCTGTCAAAATTAGT
species | Oryza sativa |
transcript | LOC_Os10g41590.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAG AATCTCTTGAGTCAEST: gi|88728249|gb|CI751759.1|CI751759
genomic: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGgttggctact ... tattccgcagAATCTCTTGAGTCA
EST: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAG AATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGAEST: gi|88296461|gb|CI669237.1|CI669237
genomic: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGgttggctact ... tattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGA
EST: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGTGATGTCAGAAG AATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGAEST: gi|88454307|gb|CI569879.1|CI569879
genomic: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGgttggctact ... tattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGA
EST: TGGGGATTTAAACGGTTTGCA-GCGCTTGATCATGAACAGATGTCAGAC- AATCTCTTGAGTCATGTC-TTCTGAGGAGATATTTCTCTTCAGACTCTTGAEST: gi|88317188|gb|CI626831.1|CI626831
genomic: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGgttggctact ... tattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGA
EST: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCACAAG AATCTCTTGACTCATGTCCTTCTGAGGAGAEST: gi|88309663|gb|CI656404.1|CI656404
genomic: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGgttggctact ... tattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGA
EST: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGTGATGTCAGAAG AATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGAEST: gi|88407459|gb|CI586300.1|CI586300
genomic: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGgttggctact ... tattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGA
EST: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAG AATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGAEST: gi|88403667|gb|CI575551.1|CI575551
genomic: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGgttggctact ... tattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGA
EST: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAG AATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCCCTTCAGACTCTTGAEST: gi|88400700|gb|CI596121.1|CI596121
genomic: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGgttggctact ... tattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGA
EST: TGGGGATTTAAAGGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAG AATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGAEST: gi|88316061|gb|CI618937.1|CI618937
genomic: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGgttggctact ... tattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGA
EST: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAG AATCTCTTGAGTCATGTCCTTCTGAGGAGEST: gi|88431474|gb|CI579591.1|CI579591
genomic: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGgttggctact ... tattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAG
EST: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCTTGAAGAGATGTCAGAAG AATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGAEST: gi|88729990|gb|CI753605.1|CI753605
genomic: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGgttggctact ... tattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGA
EST: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAG AATCTCTTGAGTCATGTCCCTTCTGAGGAGATATTTEST: gi|58669159|gb|CK057845.1|CK057845
genomic: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGgttggctact ... tattccgcagAATCTCTTGAGTCATGTCC-TTCTGAGGAGATATTT
EST: TGGGGATTTAAACGGTTTGCACGCGCTTGATCATGAAGAGATGTCAGAAG AATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTTAEST: gi|88394940|gb|CI607667.1|CI607667
genomic: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGgttggctact ... tattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGA
EST: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAG AATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGAEST: gi|88336123|gb|CI647317.1|CI647317
genomic: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGgttggctact ... tattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGA
EST: TGGGGATTTAAACGGTTCGCAAGCGCTTGATCATGAAGTGATGTCAGAAG AATCTCTTGAGTCATGTCCTTCTGAGGAGATAT
genomic: TGGGGATTTAAACGGTTTGCAAGCGCTTGATCATGAAGAGATGTCAGAAGgttggctact ... tattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATAT
tgaggtttgtttttctttcagtactgtcattgactattctttctctattccgcagAATCTCTTGAGTCATGTCCTTCTGAGGAGATATTTCTCTTCAGACTCTTGAATTCCAGGAATTTCAGAAATAATGATGACAGTAGCCTGTCAAAATTAGT
cattgac putative branch site (score: 11)
ctattctttctctatt CT-rich tract
tttgttttt TA-rich tract