1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gagaagggcaaatgctcattcttcaaaccaacatttaagatcaaagagacaggtggagcacttcttgttcatcatgctgacagttctgcttctccttcagGTTATCACTGGGAAAGGGAATGATACTTATCAGATTGAAGTCGATAAAAAGGAGTTCTTTGATGATAGGGAAGAATGCCGAGAAGCCTTACAATATGTTG
species | Oryza sativa |
transcript | LOC_Os10g40130.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTGCTGTCGCGATGGGTGAACAAGGAGATGTAGTT GTTATCACTGGGAAAGGGAATGATACTTATCAGATTGAAGTCGATAAAAAGEST: gi|88843318|gb|CI372218.1|CI372218
genomic: AGCTGCTGTCGCGATGGGTGAACAAGGAGATGTAGTTgtaagttttc ... tctccttcagGTTATCACTGGGAAAGGGAATGATACTTATCAGATTGAAGTCGATAAAAAG
EST: CTGTACGAGCTGCTGTCGCGATGGGTGAACAAGGAGATGTAGTT GTTATCACTGGGAAAGGGAATGATACTTATCAGATTGAAGTCGATAAAAAGEST: gi|58586208|gb|CF984516.1|CF984516
genomic: CTGTACGAGCTGCTGTCGCGATGGGTGAACAAGGAGATGTAGTTgtaagttttc ... tctccttcagGTTATCACTGGGAAAGGGAATGATACTTATCAGATTGAAGTCGATAAAAAG
EST: GAGTTGCTGTACGAGCTGCTGTCGCGATGGGTGAACAAGGAGATGTAGTT GTTATCACTGGGAAAGGGAATGATACTTATCAGATTGAAGGCGATAAAAAGEST: gi|89187602|gb|CI115048.1|CI115048
genomic: GAGTTGCTGTACGAGCTGCTGTCGCGATGGGTGAACAAGGAGATGTAGTTgtaagttttc ... tctccttcagGTTATCACTGGGAAAGGGAATGATACTTATCAGATTGAAGTCGATAAAAAG
EST: GAGTTGCTGTACGAGCTGCTGTCGCGATGGGTGAACAAGGAGATGTAGTT GTTATCACTGGGAAAGGGAATGATACTTATCAGATTGAAGTCGATAAAAAGEST: gi|88442462|gb|CI544029.1|CI544029
genomic: GAGTTGCTGTACGAGCTGCTGTCGCGATGGGTGAACAAGGAGATGTAGTTgtaagttttc ... tctccttcagGTTATCACTGGGAAAGGGAATGATACTTATCAGATTGAAGTCGATAAAAAG
EST: TTGCTGTACGAGCTGCTGTCGCGATGGGTGAACAAGGAGATGTAGTT GTTATCACTGGGAAAGGGAATGATACTTATCAGATTGAAGTCGATAAAAAGEST: gi|88985217|gb|CI006871.1|CI006871
genomic: TTGCTGTACGAGCTGCTGTCGCGATGGGTGAACAAGGAGATGTAGTTgtaagttttc ... tctccttcagGTTATCACTGGGAAAGGGAATGATACTTATCAGATTGAAGTCGATAAAAAG
EST: GAGTTGCTGTACGAGCTGCTGTCGCGATGGGTGAACAAGGAGATGTAGTT GTTATCACTGGGAAAGGGAATGATACTTATCAGATTGAAGTCGATAAAAAG
genomic: GAGTTGCTGTACGAGCTGCTGTCGCGATGGGTGAACAAGGAGATGTAGTTgtaagttttc ... tctccttcagGTTATCACTGGGAAAGGGAATGATACTTATCAGATTGAAGTCGATAAAAAG
gagacaggtggagcacttcttgttcatcatgctgacagttctgcttctccttcagGTTATCACTGGGAAAGGGAATGATACTTATCAGATTGAAGTCGATAAAAAGGAGTTCTTTGATGATAGGGAAGAATGCCGAGAAGCCTTACAATATGTTG
tgctgac putative branch site (score: 6)
ttctgcttctccttc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaagggcaaatgctcattcttcaaaccaacatttaagatcaaagagacaggtggagcacttcttgttcatcatgctgacagttctgcttctccttcagGTTATCACTGGGAAAGGGAATGATACTTATCAGATTGAAGTCGATAAAAAGGAGTTCTTTGATGATAGGGAAGAATGCCGAGAAGCCTTACAATATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - caaatgc
- - - - - - - - cattctt
- - - - - - - - - - - - aaaccaa
- - - - - - - - - - - - - - - - - - - gatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tggagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgct