1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtgatgtcatacactgtttggtttggtttcatctgttaatgggataatctgtagatatgttgtgtactgtggccaagttttcggtactttgtgctatgtgcacaatgtgatctatctgactcattgaatcatgcagTTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCAAGGCATCTTCTTCAACGCCCTCATGCTGTGGGGCATTGCACTCTTACAT
species | Oryza sativa |
transcript | LOC_Os10g38980.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAG TTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCAEST: gi|116875033|gb|EC365541.1|EC365541
genomic: AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAGgtatgtgatg ... aatcatgcagTTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCA
EST: AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAG TTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCAEST: gi|29640850|gb|CB645857.1|CB645857
genomic: AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAGgtatgtgatg ... aatcatgcagTTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCA
EST: TTTAGAGTATTATCTGGCTGCAAGGTGAACAAAG TTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCAEST: gi|218486338|gb|FG949831.1|FG949831
genomic: TTTAGAGTATTATCTGGCTGCAAGGTGAACAAAGgtatgtgatg ... aatcatgcagTTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCA
EST: AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAG TTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCAEST: gi|27547665|gb|CA765589.2|CA765589
genomic: AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAGgtatgtgatg ... aatcatgcagTTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCA
EST: AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAG TTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCAEST: gi|27920414|gb|CB096222.1|CB096222
genomic: AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAGgtatgtgatg ... aatcatgcagTTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCA
EST: AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAG TTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCAEST: gi|58602511|gb|CK013039.1|CK013039
genomic: AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAGgtatgtgatg ... aatcatgcagTTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCA
EST: AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAG TTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCA
genomic: AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAGgtatgtgatg ... aatcatgcagTTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCA
cggtactttgtgctatgtgcacaatgtgatctatctgactcattgaatcatgcagTTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCAAGGCATCTTCTTCAACGCCCTCATGCTGTGGGGCATTGCACTCTTACAT
atctgac putative branch site (score: 3)
attgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgatgtcatacactgtttggtttggtttcatctgttaatgggataatctgtagatatgttgtgtactgtggccaagttttcggtactttgtgctatgtgcacaatgtgatctatctgactcattgaatcatgcagTTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCAAGGCATCTTCTTCAACGCCCTCATGCTGTGGGGCATTGCACTCTTACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG