1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgttgcttccagcttgtgctttgctgaaacattttgcttgcagaaaatctagacagagatttccatgcaccttgttcctttggtcgctatatgttttcttcatcctatccatatttcagcttaacattctcttgtttatctggtttaataatcacaagtgacatgttttgcattgcagTACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAATGTCTTGCACCGTGATCTGAAGCCAAGCAATTTGTTCCTTAATGCAAATT
species | Oryza sativa |
transcript | LOC_Os10g38950.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAG TACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAATEST: gi|218479396|gb|FG953008.1|FG953008
genomic: TCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAGgtttgttgct ... tgcattgcagTACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAAT
EST: TCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAG TACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAATEST: gi|66923796|gb|CX110644.1|CX110644
genomic: TCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAGgtttgttgct ... tgcattgcagTACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAAT
EST: TCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAG TACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAATEST: gi|29614215|gb|CB619228.1|CB619228
genomic: TCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAGgtttgttgct ... tgcattgcagTACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAAT
EST: TCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAG TACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAATEST: gi|58601767|gb|CK012295.1|CK012295
genomic: TCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAGgtttgttgct ... tgcattgcagTACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAAT
EST: TCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAG TACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAATEST: gi|29614256|gb|CB619269.1|CB619269
genomic: TCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAGgtttgttgct ... tgcattgcagTACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAAT
EST: TCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAG TACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAATEST: gi|33381800|gb|CF197143.1|CF197143
genomic: TCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAGgtttgttgct ... tgcattgcagTACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAAT
EST: TCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAG TACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAAT
genomic: TCCATCAGATCATACGCTCAAATCAACCATTGACTGATGACCACTGCCAGgtttgttgct ... tgcattgcagTACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAAT
acattctcttgtttatctggtttaataatcacaagtgacatgttttgcattgcagTACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAATGTCTTGCACCGTGATCTGAAGCCAAGCAATTTGTTCCTTAATGCAAATT
tttaataatcacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttgcttccagcttgtgctttgctgaaacattttgcttgcagaaaatctagacagagatttccatgcaccttgttcctttggtcgctatatgttttcttcatcctatccatatttcagcttaacattctcttgtttatctggtttaataatcacaagtgacatgttttgcattgcagTACTTCCTGTACCAGTTGCTACGAGGGCTAAAATATGTGCACTCGGCAAATGTCTTGCACCGTGATCTGAAGCCAAGCAATTTGTTCCTTAATGCAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA