1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagcacttcaatacatttgaattggtttcaatgtatcttgccccaagttttcaagctatccttaggtccaaatattgttcactaattgagttggatgttctgaattttttgttagATGGAATATACCTAGCTGAAGTCGACAGAATTCTAAGGCCCGGGGGATACTGGATTCTCTCGGGTCCTCCGATCAATTGGAAGACACACTACAAGGGGTG
species | Oryza sativa |
transcript | LOC_Os10g36690.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTTGATATGGCACATTGTTCACGCTGCTTGATTCCTTGGCATGAATTTG ATGGAATATACCTAGCTGAAGTCGACAGAATTCTAAGGCCCGGGGGATACTEST: gi|4880936|gb|AU065235.1|AU065235
genomic: ATTTGATATGGCACATTGTTCACGCTGCTTGATTCCTTGGCATGAGTTTGgtgagcactt ... tttttgttagATGGAATATACCTAGCTGAAGTCGACAGAATTCTAAGGCCCGGGGGATACT
EST: ATTTGATATGGCACATTGTTCACGCTGCTTGATTCCTTGGCATGAGTTTG ATGGAATATACCTAGCTGAAGTCGACAGAATTCTAAGGCCCGGGGGATACTEST: gi|58671235|gb|CK059921.1|CK059921
genomic: ATTTGATATGGCACATTGTTCACGCTGCTTGATTCCTTGGCATGAGTTTGgtgagcactt ... tttttgttagATGGAATATACCTAGCTGAAGTCGACAGAATTCTAAGGCCCGGGGGATACT
EST: ATTTGATATGGCACATTGTTCACGCTGCTTGATTCCTTGGCATGAATTTG ATGGAATATACCTAGCTGAAGTCGACAGAATTCTAAGGCCCGGGGGATACTEST: gi|58658940|gb|CK047620.1|CK047620
genomic: ATTTGATATGGCACATTGTTCACGCTGCTTGATTCCTTGGCATGAGTTTGgtgagcactt ... tttttgttagATGGAATATACCTAGCTGAAGTCGACAGAATTCTAAGGCCCGGGGGATACT
EST: ATTTGATATGGCACATTGTTCACGCTGCTTGATTCCTTGGCATGAATTTG ATGGAATATACCTAGCTGAAGTCGACAGAATTCTAAGGCCCGGGGGATACTEST: gi|58601521|gb|CK012049.1|CK012049
genomic: ATTTGATATGGCACATTGTTCACGCTGCTTGATTCCTTGGCATGAGTTTGgtgagcactt ... tttttgttagATGGAATATACCTAGCTGAAGTCGACAGAATTCTAAGGCCCGGGGGATACT
EST: GGCACATTGTTCACGCTGCTTGATT-CTTGGCATGAATTTG ATGGAATATACCTAGCTGAAGTCGACAGAATTCTAAGG-CCGGGGGATACTEST: gi|58666828|gb|CK055514.1|CK055514
genomic: GGCACATTGTTCACGCTGCTTGATTCCTTGGCATGAGTTTGgtgagcactt ... tttttgttagATGGAATATACCTAGCTGAAGTCGACAGAATTCTAAGGCCCGGGGGATACT
EST: ATTTGATATGGCACATTGTTCACGCTGCTTGATTCCTTGGCATGAATTTG ATGGAATATACCTAGCTGAAGTCGACAGAATTCTAAGGCCCGGGGGATACT
genomic: ATTTGATATGGCACATTGTTCACGCTGCTTGATTCCTTGGCATGAGTTTGgtgagcactt ... tttttgttagATGGAATATACCTAGCTGAAGTCGACAGAATTCTAAGGCCCGGGGGATACT
cttaggtccaaatattgttcactaattgagttggatgttctgaattttttgttagATGGAATATACCTAGCTGAAGTCGACAGAATTCTAAGGCCCGGGGGATACTGGATTCTCTCGGGTCCTCCGATCAATTGGAAGACACACTACAAGGGGTG
cactaat putative branch site (score: 2)
ttttttgtt putative PPT
tgaattttttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcacttcaatacatttgaattggtttcaatgtatcttgccccaagttttcaagctatccttaggtccaaatattgttcactaattgagttggatgttctgaattttttgttagATGGAATATACCTAGCTGAAGTCGACAGAATTCTAAGGCCCGGGGGATACTGGATTCTCTCGGGTCCTCCGATCAATTGGAAGACACACTACAAGGGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA