1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agaatcatggctcttgccgtaaaggactatcagcaacatcaggcaatttaaatttgccatggattgcaactcatacaatctgcttttgtgtgataaacagGCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAGTGTACTGCCTGCAAGAAGACTGTGTATCCATTGGAGAAG
species | Oryza sativa |
transcript | LOC_Os10g35930.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGTACAAAGGCAAACAGTGAACAG GCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAGEST: gi|86437956|gb|CI119876.1|CI119876
genomic: AGGTACAAAGGCAAACAGTGAACAGgtaccgcatt ... tgataaacagGCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAG
EST: CCCCTCAGGTACAAAGGCAAACAGTGAACAG GCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAGEST: gi|32948518|gb|BP185090.1|BP185090
genomic: CCCCTCAGGTACAAAGGCAAACAGTGAACAGgtaccgcatt ... tgataaacagGCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAG
EST: AGGTACAAAGGCAAACAGTGAACAG GCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAGEST: gi|86479286|gb|CI121919.1|CI121919
genomic: AGGTACAAAGGCAAACAGTGAACAGgtaccgcatt ... tgataaacagGCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAG
EST: AGGTACAAAGGCAAACAGTGAACAG GCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAGEST: gi|87021526|gb|CI274133.1|CI274133
genomic: AGGTACAAAGGCAAACAGTGAACAGgtaccgcatt ... tgataaacagGCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAG
EST: AGGTACAAAGGCAAACAGTGAACAG GCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAGEST: gi|86481089|gb|CI123722.1|CI123722
genomic: AGGTACAAAGGCAAACAGTGAACAGgtaccgcatt ... tgataaacagGCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAG
EST: AACAGTGAACAG GCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAGEST: gi|4879590|gb|AU063889.1|AU063889
genomic: AACAGTGAACAGgtaccgcatt ... tgataaacagGCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAG
EST: AGGTACAAAGGCAA-CAGTGAACAG GCTAAGATTCC-AGCAAGCTGTCCTCTGTGTTCEST: gi|87020814|gb|CI269531.1|CI269531
genomic: AGGTACAAAGGCAAACAGTGAACAGgtaccgcatt ... tgataaacagGCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTC
EST: AGGTACAAAGGCAAACAGTGAACAG GCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAGEST: gi|218489691|gb|FG954871.1|FG954871
genomic: AGGTACAAAGGCAAACAGTGAACAGgtaccgcatt ... tgataaacagGCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAG
EST: AGGTACAAAGGCAAACAGTGAACAG GCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAG
genomic: AGGTACAAAGGCAAACAGTGAACAGgtaccgcatt ... tgataaacagGCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAG
atttaaatttgccatggattgcaactcatacaatctgcttttgtgtgataaacagGCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAGTGTACTGCCTGCAAGAAGACTGTGTATCCATTGGAGAAG
atacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatcatggctcttgccgtaaaggactatcagcaacatcaggcaatttaaatttgccatggattgcaactcatacaatctgcttttgtgtgataaacagGCTAAGATTCCCAGCAAGCTGTCCTCTGTGTTCTGTGGAACCCAGGACAAGTGTACTGCCTGCAAGAAGACTGTGTATCCATTGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - -catggct
- - - - - - cttgccg
- - - - - - - - - - - - - - - cagcaac
- - - - - - - - - - - - - - - - - - - -caggcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gccatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catacaa