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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgagtgtgtgtgatgggttgtgatgctatctaattatttgatcaaaagttcttgtgtgctctgctggtttggtctgaagtctctgaattcgttcacagGTGGGCTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAG

Basic information

species Oryza sativa
transcript LOC_Os10g35644.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g35644.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G822098_T05 (Zea mays), 3'ss of exon 3
catgagtgtgtgtgatgggttgtgatgctatctaattatttgatcaaaagttcttgtgtgctctgctggtt-tggtctga-agtctctgaattcgttcacagGTGGGCTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAG
                                 | ||  ||||   |   || ||        ||||| || || |||   | | | |||  | |||  |||||||||||| || |||||||||||||| | ||||||||||||||| || ||||||
------------------------------gtgacttgcttgactgagctttttttcagttcttgctgcttctgatctactactgtatgagcttgttttcagGTGGGCTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAG

upper sequence: LOC_Os10g35644.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G822098_T01 (Zea mays), 3'ss of exon 3
catgagtgtgtgtgatgggttgtgatgctatctaattatttgatcaaaagttcttgtgtgctctgctggtt-tggtctga-agtctctgaattcgttcacagGTGGGCTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAG
||  ||| ||  ||      ||  ||  |    | ||  ||||   |   || ||        ||||| || || |||   | | | |||  | |||  |||||||||||| || |||||||||||||| | ||||||||||||||| || ||||||
cagcagt-tggatggaactctg-aatagtggtgacttgcttgactgagctttttttcagttcttgctgcttctgatctactactgtatgagcttgttttcagGTGGGCTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAG

upper sequence: LOC_Os10g35644.1 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv01s0244g00110.t01 (Vitis vinifera), 3'ss of exon 5
catgagtgtgtgtgatgggttgtgatgctatctaattatttgatcaaaagttcttgtgtgctctgctggtttggt--ctgaagtctctgaattc----gttcacagGTGGGCTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAG
         |  ||   ||   | | || || |  | |   | |   |  |||||   ||   || | |  |  |  || ||||   ||  | |    || ||||| ||||||||||||||||| ||||||||||  ||||| ||    ||||| || |||
----gccacgattggatggccattaggcaatattttca--aggttctattttctttcttgtaatgattgaataatggctaaagttgttggttccttttgtccacagATGGGCTGCTAGAGTGCTTGTGAACAGTGATGAAGCTTGTGTTCATGGACGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagttcttgtgtgctctgctggtttggtctgaagtctctgaattcgttcacagGTGGGCTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAG
                                            ttcgttc  CT-rich tract