1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaactcattttaatgtgcctggtgtccatgagtatactgtagtctttgcctctgcctgaagcattaactgttacttgttacagTCGAAGATGAGGATTGGGTTAGCAGAAAAAACCGTCCAGATGGCTCTTGGGCAAGCTGCTGTGTATTCTGAAAAACATTCTCCACCGTCAAAAATCCAAT
species | Oryza sativa |
transcript | LOC_Os10g34750.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGTTGCCGCAACTGACTGTGAACCTCAATACATTACACGACTACTTCAG TCGAAGATGAGGATTGGGTTAGCAGAAAAAACCGTCCAGATGGCTCTTGGGEST: gi|218492522|gb|FG943268.1|FG943268
genomic: TCGTTGCCGCAACTGACTGTGAACCTCAATACATTACACGACTACTTCAGgtaactcatt ... cttgttacagTCGAAGATGAGGATTGGGTTAGCAGAAAAAACCGTCCAGATGGCTCTTGGG
EST: TCGTTGCCGCAACTGACTGTGAACCTCAATACATTACACGACTACTTCAG TCGAAGATGAGGATTGGGTTAGCAGAAAAAACCGTCCAGATGGCTCTTGGG
genomic: TCGTTGCCGCAACTGACTGTGAACCTCAATACATTACACGACTACTTCAGgtaactcatt ... cttgttacagTCGAAGATGAGGATTGGGTTAGCAGAAAAAACCGTCCAGATGGCTCTTGGG
tgagtatactgtagtctttgcctctgcctgaagcattaactgttacttgttacagTCGAAGATGAGGATTGGGTTAGCAGAAAAAACCGTCCAGATGGCTCTTGGGCAAGCTGCTGTGTATTCTGAAAAACATTCTCCACCGTCAAAAATCCAAT
cattaac putative branch site (score: 17)
attaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactcattttaatgtgcctggtgtccatgagtatactgtagtctttgcctctgcctgaagcattaactgttacttgttacagTCGAAGATGAGGATTGGGTTAGCAGAAAAAACCGTCCAGATGGCTCTTGGGCAAGCTGCTGTGTATTCTGAAAAACATTCTCCACCGTCAAAAATCCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT