1 5' 3' | 2 5' 3' | 3 5' 3' |
...acccattctatctttttactagaattcttccatcttattacctctcttgctgatctgaatttgacaagcagttctaagcacagaattttcatatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCTGGTGTTGTGGGAAAAATGATGTATCATCTGCTTCTGCTTGTGGATTGA
species | Oryza sativa |
transcript | LOC_Os10g33270.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCGCNTGGTGTTCACATTTGATGGG-AATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGGTGACCCGCAAGACATCTTGAGATGGCEST: gi|86484118|gb|CI126751.1|CI126751
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACCGTGAGCAG AGATCTGATCATATGAGGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|87010351|gb|CI281241.1|CI281241
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|88527082|gb|CI455199.1|CI455199
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|88998230|gb|CI038115.1|CI038115
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: CATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|88537579|gb|CI466540.1|CI466540
genomic: CATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|88474979|gb|CI412250.1|CI412250
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG ANATCTGATCATATGATGTTTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|86535937|gb|CI176143.1|CI176143
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGTTGACCCGCAAGACATCTTGAGATGGCEST: gi|88513993|gb|CI441499.1|CI441499
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|11025781|gb|AU162382.1|AU162382
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|88514379|gb|CI441885.1|CI441885
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|86254024|gb|CI058751.1|CI058751
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|25798783|gb|CA754744.1|CA754744
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|58693386|gb|CK082073.1|CK082073
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|88439725|gb|CI541282.1|CI541282
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTTTAGNCTGACCCGCAAGACATCTTGAGATGGCEST: gi|88463661|gb|CI696136.1|CI696136
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: TCGCGTGGTGGTCACCATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCCGATCCCATGATGTCTACGCTGACCCGCEST: gi|427738|gb|D23873.1|D23873
genomic: TCGCGTGGTGGTCAC-ATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|88578606|gb|CI687547.1|CI687547
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTCCCTTACAGTGAGCAG AGATCTGATCATATGAEST: gi|88514316|gb|CI441822.1|CI441822
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGA
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|88979062|gb|CI025570.1|CI025570
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|86418185|gb|CI032394.1|CI032394
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|88998125|gb|CI038010.1|CI038010
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|88545694|gb|CI475273.1|CI475273
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|86855243|gb|CI265169.1|CI265169
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCEST: gi|86533060|gb|CI173266.1|CI173266
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
EST: GTCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAG AGATCCGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
genomic: ATCGCGTGGTGGTCACATTTGATGGGAAATATCTTCCTTACAGTGAGCAGgttagtgttt ... atatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGC
cttgctgatctgaatttgacaagcagttctaagcacagaattttcatatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCTGGTGTTGTGGGAAAAATGATGTATCATCTGCTTCTGCTTGTGGATTGA
ttttcat CT-rich tract
agaattttcatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccattctatctttttactagaattcttccatcttattacctctcttgctgatctgaatttgacaagcagttctaagcacagaattttcatatttgcagAGATCTGATCATATGATGTCTAGGCTGACCCGCAAGACATCTTGAGATGGCTGGTGTTGTGGGAAAAATGATGTATCATCTGCTTCTGCTTGTGGATTGA
-cccattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacagaa