1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatgtgtttttttttgagatttgagcattaccttttgaaacatggcttcaaccatagaccaatgataactagagaaaactaacatgcctttgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGGTCTACAGCTTCCAT
species | Oryza sativa |
transcript | LOC_Os10g32970.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAANCCGTTCCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATEST: gi|5667210|gb|AU077496.1|AU077496
genomic: AGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTT-CAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGAT
EST: AGACAAGCTNGCATTGTGGACTAGGACTGCCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTANAATGATAAGATGEST: gi|88418154|gb|CI501679.1|CI501679
genomic: AGACAAGCTTGCATTGTGGACTAGGACTG-CCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: AGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|88287006|gb|CI500066.1|CI500066
genomic: AGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: CATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|86522564|gb|CI162770.1|CI162770
genomic: CATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|88565841|gb|CI496558.1|CI496558
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: CCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|88460719|gb|CI534591.1|CI534591
genomic: CCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: AGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|88284371|gb|CI405817.1|CI405817
genomic: AGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|88200110|gb|CI199960.1|CI199960
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|88509260|gb|CI436766.1|CI436766
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTTGACTAGGACTGCCAGCAATGAACCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|8860119|gb|AU097437.1|AU097437
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGNATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|89165097|gb|CI255154.1|CI255154
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|88286887|gb|CI520197.1|CI520197
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTTTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|86525895|gb|CI166101.1|CI166101
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|88435008|gb|CI504350.1|CI504350
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|86597282|gb|CI280419.1|CI280419
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|218493197|gb|FG958056.1|FG958056
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|88568661|gb|CI499378.1|CI499378
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: CAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCNTTCAG GTAAACATTGGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATEST: gi|89161806|gb|CI102154.1|CI102154
genomic: CAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATT-GGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGAT
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|218485786|gb|FG945172.1|FG945172
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATTAGATGEST: gi|88281177|gb|CI402375.1|CI402375
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|88842763|gb|CI371663.1|CI371663
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|86501861|gb|CI144494.1|CI144494
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|86522556|gb|CI162762.1|CI162762
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|27576343|gb|CA999037.1|CA999037
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|88284235|gb|CI405681.1|CI405681
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|29665281|gb|CB661556.1|CB661556
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|58681185|gb|CK069872.1|CK069872
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: AGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|218483813|gb|FG965939.1|FG965939
genomic: AGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|88471338|gb|CI408609.1|CI408609
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|33796941|gb|CF324334.1|CF324334
genomic: GCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: CCAGCAATGAACCCGTTCGG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|88434999|gb|CI504341.1|CI504341
genomic: CCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: CTTGCATTGTGGAGTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|88373901|gb|CI508520.1|CI508520
genomic: CTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGNACTAGGACTNCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|86507489|gb|CI150122.1|CI150122
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGEST: gi|88263461|gb|CI367235.1|CI367235
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
EST: GAGACAAGCTTCCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAG GTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
genomic: GAGACAAGCTTGCATTGTGGACTAGGACTGCCAGCAATGAAGCCGTTCAGgttggttttt ... tgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATG
cttcaaccatagaccaatgataactagagaaaactaacatgcctttgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGGTCTACAGCTTCCAT
aactaac putative branch site (score: 24)
cctttgcttt putative PPT
aatgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtgtttttttttgagatttgagcattaccttttgaaacatggcttcaaccatagaccaatgataactagagaaaactaacatgcctttgctttgcagGTAAACATTGGCAAGAAATGGAAGGAGATTGTTGACTACAATGATAAGATGGTCTACAGCTTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- tgtgttt
- - - - - - - - - - - - - - - - - - - - - tggcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -agaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcct