1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtctatcttgggtgaaggcaaatagtacttttctactgtacactttcaatatccattcaatatagcttttctgtttcttatctatttatttttttagGCTATTAAGATTTTGAATATGATCAAGCTATATGGAAAACCAATAAGAGTAAACAAG
species | Oryza sativa |
transcript | LOC_Os10g31900.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGATGCAGATTAT GCTATTAAGATTTTGAATATGATCAAGCTATATGGAAAACCAATAAGAGTAEST: gi|58678587|gb|CK067274.1|CK067274
genomic: AGATGCAGATTATgtaagtctat ... atttttttagGCTATTAAGATTTTGAATATGATCAAGCTATATGGAAAACCAATAAGAGTA
EST: ACCAGGGCTATGGATTTGTAGAATTCAGAAGTGAAGAAGATGCAGATTAT GCTATTAAGATTTTGAATATGATCAAGCTATATGGAAAACCAATAAGAGTAEST: gi|218490390|gb|FG958429.1|FG958429
genomic: ACCAGGGCTATGGATTTGTAGAATTCAGAAGTGAAGAAGATGCAGATTATgtaagtctat ... atttttttagGCTATTAAGATTTTGAATATGATCAAGCTATATGGAAAACCAATAAGAGTA
EST: ACCAGGNCTATGGATTTGTAGAATTCAGAAGTGAAGAAGATGCAGATTAT GCTATTAAGATTTTGAATATGATCAAGCTATATGGAAAACCAATAAGAGTAEST: gi|218497396|gb|FG967338.1|FG967338
genomic: ACCAGGGCTATGGATTTGTAGAATTCAGAAGTGAAGAAGATGCAGATTATgtaagtctat ... atttttttagGCTATTAAGATTTTGAATATGATCAAGCTATATGGAAAACCAATAAGAGTA
EST: ACCAGGGCTATGGATTTGTAGAATTCAGAAGTGAAGAAGATGCAGATTAT GCTATTAAGATTTTGAATATGATCAAGCTATATGGAAAACCAATAAGAGTA
genomic: ACCAGGGCTATGGATTTGTAGAATTCAGAAGTGAAGAAGATGCAGATTATgtaagtctat ... atttttttagGCTATTAAGATTTTGAATATGATCAAGCTATATGGAAAACCAATAAGAGTA
ctttcaatatccattcaatatagcttttctgtttcttatctatttatttttttagGCTATTAAGATTTTGAATATGATCAAGCTATATGGAAAACCAATAAGAGTAAACAAG
cttttctgtttcttat CT-rich tract
ttttctgtttcttatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctatcttgggtgaaggcaaatagtacttttctactgtacactttcaatatccattcaatatagcttttctgtttcttatctatttatttttttagGCTATTAAGATTTTGAATATGATCAAGCTATATGGAAAACCAATAAGAGTAAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT