1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgaggatttgatgtccatacccttttctggaatgattgaagcttgtgtaatcaattgttgctgacctgcttttgttggacttgaaaatgtagGTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTTTG
species | Oryza sativa |
transcript | LOC_Os10g31000.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAAT GTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTTEST: gi|33654410|gb|CF277024.1|CF277024
genomic: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAATgtgaggattt ... gaaaatgtagGTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTT
EST: TGTGGATGAAAT GTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTTEST: gi|58659537|gb|CK048217.1|CK048217
genomic: TGTGGATGAAATgtgaggattt ... gaaaatgtagGTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTT
EST: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAAT GTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTTEST: gi|163926790|gb|EG715078.1|EG715078
genomic: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAATgtgaggattt ... gaaaatgtagGTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTT
EST: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAAT GTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTTEST: gi|38478467|gb|CF962600.1|CF962600
genomic: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAATgtgaggattt ... gaaaatgtagGTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTT
EST: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAAT GTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTTEST: gi|27410240|gb|CA923310.1|CA923310
genomic: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAATgtgaggattt ... gaaaatgtagGTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTT
EST: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAAT GTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTTEST: gi|163927163|gb|EG715184.1|EG715184
genomic: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAATgtgaggattt ... gaaaatgtagGTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTT
EST: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAAT GTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTTEST: gi|86896481|gb|CI328868.1|CI328868
genomic: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAATgtgaggattt ... gaaaatgtagGTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTT
EST: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAAT GTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTTEST: gi|58681245|gb|CK069932.1|CK069932
genomic: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAATgtgaggattt ... gaaaatgtagGTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTT
EST: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAAT GTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTTEST: gi|86854335|gb|CI254280.1|CI254280
genomic: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAATgtgaggattt ... gaaaatgtagGTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTT
EST: ATCATCCTAATGTGGATGAAAT GTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTTEST: gi|218478509|gb|FG954791.1|FG954791
genomic: ATCATCCTAATGTGGATGAAATgtgaggattt ... gaaaatgtagGTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTT
EST: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAAT GTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTT
genomic: CCGTCGATTGGTTTCGTTAACAAGATTTATCATCCTAATGTGGATGAAATgtgaggattt ... gaaaatgtagGTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTT
gaagcttgtgtaatcaattgttgctgacctgcttttgttggacttgaaaatgtagGTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTTTG
tgctgac putative branch site (score: 73)
taatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggatttgatgtccatacccttttctggaatgattgaagcttgtgtaatcaattgttgctgacctgcttttgttggacttgaaaatgtagGTCTGGTTCTGTGTGTTTGGATGTCATTAACCAGACGTGGAGCCCAATGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG