1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgagaacatttcttttacagaccttgtgctttaccttgaatcccttaaactttgactgacttcatcagtgggaaaatgtagATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGGCTTATCTGAGGCCAGTGCTGATACCATTAGACGAGCACATGCAGTTTACC
species | Oryza sativa |
transcript | LOC_Os10g28320.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACT---- ATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGGCEST: gi|58667429|gb|CK056115.1|CK056115
genomic: GTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACTGTGTgtatgagaac ... gaaaatgtagATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGGC
EST: GTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACT---- ATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGEST: gi|29687719|gb|CB683994.1|CB683994
genomic: GTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACTGTGTgtatgagaac ... gaaaatgtagATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTG
EST: GAACTATCAGCATCGCATTGACCAGTCAGTACCCATACAGGAAACTGTGT ATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGGC
genomic: GTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACTGTGTgtatgagaac ... gaaaatgtagATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGGC
tgctttaccttgaatcccttaaactttgactgacttcatcagtgggaaaatgtagATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGGCTTATCTGAGGCCAGTGCTGATACCATTAGACGAGCACATGCAGTTTACC
gactgac putative branch site (score: 1)
ttaaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgagaacatttcttttacagaccttgtgctttaccttgaatcccttaaactttgactgacttcatcagtgggaaaatgtagATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGGCTTATCTGAGGCCAGTGCTGATACCATTAGACGAGCACATGCAGTTTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT