1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcaatttatcaaatggaaaggaaatattggagagcttctcccatcctggtagctgttgtcatatgacattttgtgactgacattgtttaattattggtagGACTACGAAGCAAAACTTTCGGATTTCGGACTGGCCAAAGATGGGCCTCAAGAAGACGAGACACATGTCTCCACTAGAGTGATGGGCACACAGGGCTATG
species | Oryza sativa |
transcript | LOC_Os10g25550.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCCCGTCATCTATCGCGACTTCAAGACCTCCAACATCCTACTCAACTCG GACTACGAAGCAAEST: gi|87034443|gb|CI189067.1|CI189067
genomic: AGCCCGTCATCTATCGCGACTTCAAGACCTCCAACATCCTACTCAACTCGgtatacatat ... ttattggtagGACTACGAAGCAA
EST: CATCTATCGCGACTTCAAGACCTCCTACATCCTACTCTACTCG GACTACGAAGCAAAACTTTCGGATTTCGGACTGGCCAAAGATGGGCCTCAAEST: gi|87015000|gb|CI273398.1|CI273398
genomic: CATCTATCGCGACTTCAAGACCTCCAACATCCTACTCAACTCGgtatacatat ... ttattggtagGACTACGAAGCAAAACTTTCGGATTTCGGACTGGCCAAAGATGGGCCTCAA
EST: CATCTATCGCGACTTCAAGACCTCCAACATCCTACTCAACTCG GACTACGAAGCAAAACTTTCGGATTTCGGACTGGCCAAAGATGGGCCTCAA
genomic: CATCTATCGCGACTTCAAGACCTCCAACATCCTACTCAACTCGgtatacatat ... ttattggtagGACTACGAAGCAAAACTTTCGGATTTCGGACTGGCCAAAGATGGGCCTCAA
ctggtagctgttgtcatatgacattttgtgactgacattgtttaattattggtagGACTACGAAGCAAAACTTTCGGATTTCGGACTGGCCAAAGATGGGCCTCAAGAAGACGAGACACATGTCTCCACTAGAGTGATGGGCACACAGGGCTATG
acattgtttaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaatttatcaaatggaaaggaaatattggagagcttctcccatcctggtagctgttgtcatatgacattttgtgactgacattgtttaattattggtagGACTACGAAGCAAAACTTTCGGATTTCGGACTGGCCAAAGATGGGCCTCAAGAAGACGAGACACATGTCTCCACTAGAGTGATGGGCACACAGGGCTATG
- - - - - - - - aaaggaaa
- - - - - - - - - - - - - - - - agcttct
- - - - - - - - - - - - - - - - - - - - - - - - - -gctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgactg