1 5' 3' | 2 5' 3' | 3 5' 3' |
...atctgcacatccttgtaacttgcttgaagttatgaaaacaatgggttttctctatatttgcagtagtgtcattcttaactggtccatttgcctcaagcagATCCTCTTTTCGATGTGGCTGAAGAGAAGGAATGTATTTCAAGTCATACCAGGGCGCCACAGAAACTGAGGTGGTTCATATATACCAGAGTGCCATAGAA
species | Oryza sativa |
transcript | LOC_Os10g13810.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTGAAGAAGGAAGCAAGGCCCCTACTATAGCTCCTTGCTTACCTTGCAG ATCCTCTTTTCGATGTGGCTGAAGAGAAGGAATGTATTTCAAGTCATACCAEST: gi|88231390|gb|CI231239.1|CI231239
genomic: TTTGAAGAAGGAAGCAAGGCCCCTACTATAGCTCCTTGCTTACCTTGCAGgtacaaactt ... cctcaagcagATCCTCTTTTCGATGTGGCTGAAGAGAAGGAATGTATTTCAAGTCATACCA
EST: TTTGAAGAAGGAAGCAAGGCCCCTACTATAGCTCCTTGCTTACCTTGCAG ATCCTCTTTTCGATGTGGCTGAAGAGAAGGAATGTATTTCAAGTCATACCAEST: gi|89182623|gb|CI113992.1|CI113992
genomic: TTTGAAGAAGGAAGCAAGGCCCCTACTATAGCTCCTTGCTTACCTTGCAGgtacaaactt ... cctcaagcagATCCTCTTTTCGATGTGGCTGAAGAGAAGGAATGTATTTCAAGTCATACCA
EST: TTTGAAGAAGGAAGCAAGGCCCCTACTATAGCTCCTTGCTTACCTTGCAG ATCCTCTTTTCGATGTGGCTGAAGAGAAGGAATGTATTTCAAGTCATACCAEST: gi|66920560|gb|CX107408.1|CX107408
genomic: TTTGAAGAAGGAAGCAAGGCCCCTACTATAGCTCCTTGCTTACCTTGCAGgtacaaactt ... cctcaagcagATCCTCTTTTCGATGTGGCTGAAGAGAAGGAATGTATTTCAAGTCATACCA
EST: TCTGAAGAAGGAAGCAAGGCCCCTACTATAGCTCCTTGCTTACCTTGCAG ATCCTCTTTTCGATGTGGCTGAAGAGAAGGAATGTATTTCAAGTCATACCA
genomic: TTTGAAGAAGGAAGCAAGGCCCCTACTATAGCTCCTTGCTTACCTTGCAGgtacaaactt ... cctcaagcagATCCTCTTTTCGATGTGGCTGAAGAGAAGGAATGTATTTCAAGTCATACCA
ttttctctatatttgcagtagtgtcattcttaactggtccatttgcctcaagcagATCCTCTTTTCGATGTGGCTGAAGAGAAGGAATGTATTTCAAGTCATACCAGGGCGCCACAGAAACTGAGGTGGTTCATATATACCAGAGTGCCATAGAA
tcttaac putative branch site (score: 7)
tttgcctc putative PPT
tctatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctgcacatccttgtaacttgcttgaagttatgaaaacaatgggttttctctatatttgcagtagtgtcattcttaactggtccatttgcctcaagcagATCCTCTTTTCGATGTGGCTGAAGAGAAGGAATGTATTTCAAGTCATACCAGGGCGCCACAGAAACTGAGGTGGTTCATATATACCAGAGTGCCATAGAA
atctgca
- - - - - - - - - -ttgcttg
- - - - - - - - - - - - - - - - - aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggtcc