1 5' 3' | 2 5' 3' | 3 5' 3' |
...caaaattaaaaaaaaaaagttgctgggtgaggggaagggtggcaaggtggttgaaatttcataccaaaatgttgaatcctgcctaacatatgcaatgcagGGGCGCCCGTGCATCGGTGTGGGAGAACTTCAAGAACAACCCGATGTTCGACATCTCTACGGACCACCCCCAAACCTACTACGAGGACATGCAGCGTGCA
species | Oryza sativa |
transcript | LOC_Os10g10080.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTTTGTTCTATGATACTTCGAATGATC-TGAGGGTGGTTACTATGCAAG GGGCGCCCGTGCATCGGTGTGGGAAGAACTTTCAAGAACAANCCGATGTTCEST: gi|8857145|gb|AU094463.1|AU094463
genomic: GGTTTGTTCTATGATACTTCGAATGATCCTGAGGGTGGTTACTATGCAAGgtatgcacct ... tgcaatgcagGGGCGCCCGTGCATCGGTGTGGGA-GAACTT-CAAGAACAACCCGATGTTC
EST: GGNTTGGTCTATGATACTTCGAATGATCCTGAGGGTGGNTACTATGCAAG GGGCCGCCCGTGCATCGGTGTGGGGAGAACTTCAAGAEST: gi|58656039|gb|CK044719.1|CK044719
genomic: GGTTTGTTCTATGATACTTCGAATGATCCTGAGGGTGGTTACTATGCAAGgtatgcacct ... tgcaatgcagGGGC-GCCCGTGCATCGGTGTGGG-AGAACTTCAAGA
EST: GGTTTGTTCTATGATACTTCGAATGATCCTGAGGGTGGTTACTATGCAAG GGGCGCCCGTGCATCGGTGTGGGAGAACTTCAAGAAEST: gi|86502920|gb|CI145553.1|CI145553
genomic: GGTTTGTTCTATGATACTTCGAATGATCCTGAGGGTGGTTACTATGCAAGgtatgcacct ... tgcaatgcagGGGCGCCCGTGCATCGGTGTGGGAGAACTTCAAGAA
EST: GGTTTGTTCTATGATACTTCGAATGATCCTGAGGGTGGTTACTATGCAAG GGGCGCCCGTGCATCGGTGTGGGAGAACTTCAAGAACAACCCGATGTTCGA
genomic: GGTTTGTTCTATGATACTTCGAATGATCCTGAGGGTGGTTACTATGCAAGgtatgcacct ... tgcaatgcagGGGCGCCCGTGCATCGGTGTGGGAGAACTTCAAGAACAACCCGATGTTCGA
ggtggttgaaatttcataccaaaatgttgaatcctgcctaacatatgcaatgcagGGGCGCCCGTGCATCGGTGTGGGAGAACTTCAAGAACAACCCGATGTTCGACATCTCTACGGACCACCCCCAAACCTACTACGAGGACATGCAGCGTGCA
gcctaac putative branch site (score: 8)
aaatttcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaattaaaaaaaaaaagttgctgggtgaggggaagggtggcaaggtggttgaaatttcataccaaaatgttgaatcctgcctaacatatgcaatgcagGGGCGCCCGTGCATCGGTGTGGGAGAACTTCAAGAACAACCCGATGTTCGACATCTCTACGGACCACCCCCAAACCTACTACGAGGACATGCAGCGTGCA
- - - -aaaaaaa
- - - - - - - - - gttgctg
- - - - - - - - - - - - - - - - - - - -tggcaag
- - - - - - - - - - - - - - - - - - - - - - - gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa