1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattgtggctctctgggttgccacagaggttctaattgcatcacgtatggtgcacttatgttggatggtatggtccgtggtgcagGGGAGGACACTGCGGTGCTCATTGTCACAGGCAAAGCACAGGCTATTTGTTGGCAATGTACCCAAGGGGTTGAGTGAGGACGAGCTGAGAAACATAATCC
species | Oryza sativa |
transcript | LOC_Os10g06130.5 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGATGGGGCTCAGCGTGCTATTGAGGATCTGCATGACAAAGAACACAAG GGGAGGACACTGCGGTGCTCATTGTCACAGGCAAAGCACAGGCTATTTGTTEST: gi|29663246|gb|CB659521.1|CB659521
genomic: AGGATGGGGCTCAGCGTGCTATTGAGGATCTGCATGACAAAGAACACAAGgtattgtggc ... cgtggtgcagGGGAGGACACTGCGGTGCTCATTGTCACAGGCAAAGCACAGGCTATTTGTT
EST: AGGATGGGGCTCAGCGTGCTATTGAGGATCTGCATGACAAAGAACACAAG GGGAGGACACTGCGGTGCTCATTGTCACAGGCAAAGCACAGGCTATTTGTTEST: gi|58604638|gb|CK015166.1|CK015166
genomic: AGGATGGGGCTCAGCGTGCTATTGAGGATCTGCATGACAAAGAACACAAGgtattgtggc ... cgtggtgcagGGGAGGACACTGCGGTGCTCATTGTCACAGGCAAAGCACAGGCTATTTGTT
EST: AGGATGGGGCTCAGCATGCTATCGAGGATCTGCATGACAAAGAACACAAG GGGAGGACACTGCGGTGCTCATTGTCTCAGGCAAAGCACAGGCTATTTGTT
genomic: AGGATGGGGCTCAGCGTGCTATTGAGGATCTGCATGACAAAGAACACAAGgtattgtggc ... cgtggtgcagGGGAGGACACTGCGGTGCTCATTGTCACAGGCAAAGCACAGGCTATTTGTT
tctaattgcatcacgtatggtgcacttatgttggatggtatggtccgtggtgcagGGGAGGACACTGCGGTGCTCATTGTCACAGGCAAAGCACAGGCTATTTGTTGGCAATGTACCCAAGGGGTTGAGTGAGGACGAGCTGAGAAACATAATCC
ttctaat putative branch site (score: 2)
ttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtggctctctgggttgccacagaggttctaattgcatcacgtatggtgcacttatgttggatggtatggtccgtggtgcagGGGAGGACACTGCGGTGCTCATTGTCACAGGCAAAGCACAGGCTATTTGTTGGCAATGTACCCAAGGGGTTGAGTGAGGACGAGCTGAGAAACATAATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA