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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atacctatgttgcattgtttagtgaatcttatcgtgcatatcatgtttattaactagatatgaaactatttagaactgaaagtacaaactggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGCTTCAACAAGAGCAGGTTAAGAGAGAATCTAGGCATCTTTGATTGGGAGC

Basic information

species Oryza sativa
transcript LOC_Os10g02480.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86862020|gb|CI330642.1|CI330642
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|86865712|gb|CI335428.1|CI335428
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|29639000|gb|CB644009.1|CB644009
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|29615189|gb|CB620202.1|CB620202
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|8859367|gb|AU096685.1|AU096685
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGT-ATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88547195|gb|CI477475.1|CI477475
EST:     TCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: TCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|58693438|gb|CK082125.1|CK082125
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|33800272|gb|CF326002.1|CF326002
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88217883|gb|CI217732.1|CI217732
EST:     GGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAGTCGTCAAGAGC
genomic: GGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|29638999|gb|CB644008.1|CB644008
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTNAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATG
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATG
EST: gi|88995454|gb|CI022777.1|CI022777
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88214740|gb|CI214589.1|CI214589
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88550603|gb|CI480594.1|CI480594
EST:     AAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: AAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|86513046|gb|CI155679.1|CI155679
EST:     TCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: TCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88205565|gb|CI205414.1|CI205414
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88901711|gb|CI001819.1|CI001819
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|86874075|gb|CI335774.1|CI335774
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|86526540|gb|CI166746.1|CI166746
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|86536888|gb|CI177094.1|CI177094
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88529626|gb|CI457962.1|CI457962
EST:     GAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|86509090|gb|CI151723.1|CI151723
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88469222|gb|CI406493.1|CI406493
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|29688767|gb|CB685042.1|CB685042
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88214236|gb|CI214085.1|CI214085
EST:     TTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: TTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88535321|gb|CI464116.1|CI464116
EST:     GGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|86261191|gb|CI004756.1|CI004756
EST:     GTCCTCTTC-CAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88543647|gb|CI473673.1|CI473673
EST:     CATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: CATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88965301|gb|CI009337.1|CI009337
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88542460|gb|CI471791.1|CI471791
EST:     TTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: TTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88976540|gb|CI024673.1|CI024673
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|2801031|gb|AA754325.1|AA754325
EST:     GCCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTK-GTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88547629|gb|CI477939.1|CI477939
EST:     AAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: AAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|29686964|gb|CB683239.1|CB683239
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88473296|gb|CI410567.1|CI410567
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88523958|gb|CI451829.1|CI451829
EST:     CCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: CCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|22305596|gb|BQ906818.1|BQ906818
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88216570|gb|CI214670.1|CI214670
EST:     CTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: CTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|86852937|gb|CI323246.1|CI323246
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88540942|gb|CI469022.1|CI469022
EST:     CAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: CAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88981673|gb|CI027264.1|CI027264
EST:     GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: GTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88551463|gb|CI481520.1|CI481520
EST:     CTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGT-TAATCTTCAAGAGC
genomic: CTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|86256139|gb|CI007855.1|CI007855
EST:     AAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
genomic: AAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC
EST: gi|88528982|gb|CI457270.1|CI457270
EST:     GGTAAAACTATTGCCCAG                         GTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCTTCAAGAGC
genomic: GGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 75 (downstream exon)
Score: 54

TCCTTTAGGTGGAAAGGGTACACCATGGAGCAACAATGCTGTCATGGATTGTCCTCTTCTCAAACAGATTGCCATGGAGAGGGGTAAAACTATTGCCCAGgtaaacagaa ... ggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGCTTCAACAAGAGCAGGTTAAGAGAGAATCTAGGCATCTTTGATTGGGAGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattaactagatatgaaactatttagaactgaaagtacaaactggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGCTTCAACAAGAGCAGGTTAAGAGAGAATCTAGGCATCTTTGATTGGGAGC
  tattaac  putative branch site (score: 54)
            atatgaaactattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atacctatgttgcattgtttagtgaatcttatcgtgcatatcatgtttattaactagatatgaaactatttagaactgaaagtacaaactggaagtgtagGTATGCTTGAGGTGGGTGTATGAGCAAGGAGATTGTGTAATCGTCAAGAGCTTCAACAAGAGCAGGTTAAGAGAGAATCTAGGCATCTTTGATTGGGAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - atgttgc
- - - - - - - - - - -gtgaatc
- - - - - - - - - - - - - - - - -gtgcata
- - - - - - - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacaaa