Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtatattcgattcactgacatctttacaactgggattaagcaaccactggtaatcattgttacatggaggctgtgaactgatgctaattgactcataccatcaataacttttgtgtcttttaactttgcttacccaagtaacacacttttccaatctgaattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCGCGCCGAGGCTTTTAATGGGATAGCAGGCTTTGTGGGGGTTTAACAGCAT

Basic information

species Oryza sativa
transcript LOC_Os09g39180.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g39180.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G011129_T01 (Zea mays), 3'ss of exon 3
gtaagtgtatattcgattcactgacatctttacaactgggattaagcaaccactggtaatcattgttacatggaggctgtgaactgatgctaattgactcataccatcaataacttttg-tgtcttttaactttgcttacccaagtaacacacttttccaatctgaattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCGCGCCGAGGCTTTTAATGGGATAGCA--GGCTTTGTGGGGGTTTAACAGCAT-
|| ||| |  ||||    || |  |||    |||  |    ||      ||     |||| | |   |||  || |||| | | |||| ||        | |  | |  |  |     | |   ||  | |||| ||||| | |  ||   |  ||   |||||| |||   ||||||||||||||||||||  || | |||||||||||||||||||| |||| |||   ||| || ||||| | | | |  || |     |     |     ||| 
gtcagtctcgattcctgccatttgcataaccacag-taactttgtttgtcctgaaataattaataccacagtgaagctgcggagtgattctgtcctttccttttcctataccatgcccgataagttaaagcttttcttacgccaaaaatttaacttcttaatctggattgtgcagAGTTTGGATGGCCGTGCCTTGCGGGTGAATGTTGCAGAGGAGCGGCCACGGCG---AGGTTTCTAATGAGGTTGTATCGGGTGGACTGCACGCTTGTTCCATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|42591810|gb|CK738296.1|CK738296
EST:     TGGCGACACAGGAAGAATTGGATGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86419385|gb|CI054186.1|CI054186
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88829949|gb|CI004987.1|CI004987
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88726528|gb|CI750183.1|CI750183
EST:     TGGCGACACAGGAACAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86533127|gb|CI173333.1|CI173333
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGCCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86895943|gb|CI316108.1|CI316108
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGCCCGTGCGCTGAGAGTGAATGTTCCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88257614|gb|CI360200.1|CI360200
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88839638|gb|CI015729.1|CI015729
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88266905|gb|CI368681.1|CI368681
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATGGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86420834|gb|CI056823.1|CI056823
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88991582|gb|CI019760.1|CI019760
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88482297|gb|CI419568.1|CI419568
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATTGACAG                         AGTTTGGATGGCCGTGCGCTGAGAATGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88847002|gb|CI005981.1|CI005981
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88838978|gb|CI012854.1|CI012854
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86538579|gb|CI178785.1|CI178785
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86860686|gb|CI324952.1|CI324952
EST:     TGGCGACACAGGAAGAATT-GACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86879960|gb|CI340012.1|CI340012
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86538531|gb|CI178737.1|CI178737
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|89170022|gb|CI039299.1|CI039299
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88215527|gb|CI215376.1|CI215376
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|89198553|gb|CI016638.1|CI016638
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|89162661|gb|CI099353.1|CI099353
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86259095|gb|CI010396.1|CI010396
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|29666156|gb|CB662431.1|CB662431
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86420880|gb|CI056869.1|CI056869
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88540543|gb|CI468597.1|CI468597
EST:     GGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGNCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: -GGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88532751|gb|CI461380.1|CI461380
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|38480795|gb|CF964884.1|CF964884
EST:     TGGCGACACAGGAAGAATTGGATGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86522777|gb|CI162983.1|CI162983
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|89187941|gb|CI009925.1|CI009925
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|29666122|gb|CB662397.1|CB662397
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88306842|gb|CI672008.1|CI672008
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|87033509|gb|CI188133.1|CI188133
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86603206|gb|CI357570.1|CI357570
EST:     GCTATTGCAAGCCCTCGATGGACAG                         AGTTTGGATGGCCATGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: GCTATTGC-AGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86887850|gb|CI297961.1|CI297961
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86261198|gb|CI004763.1|CI004763
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86887397|gb|CI313300.1|CI313300
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCCCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88260874|gb|CI361462.1|CI361462
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCATCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86261387|gb|CI014454.1|CI014454
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88218478|gb|CI218327.1|CI218327
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86896725|gb|CI328993.1|CI328993
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88219479|gb|CI219039.1|CI219039
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGGCCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86602628|gb|CI356992.1|CI356992
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|89162484|gb|CI099176.1|CI099176
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|29685874|gb|CB682149.1|CB682149
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|89167291|gb|CI252822.1|CI252822
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|88284777|gb|CI406223.1|CI406223
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTNCANCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGGTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
EST: gi|86538522|gb|CI178728.1|CI178728
EST:     TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAG                         AGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG
genomic: TGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 64 (downstream exon)
Score: 63

TGTGTATGACAGAGAAACTGGGCGTTCACGAGGATTTGGTTTTGTAACAATGGCGACACAGGAAGAATTGGACGACGCTATTGCAGCCCTCGATGGACAGgtaagtgtat ... aattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCGCGCCGAGGCTTTTAATGGGATAGCAGGCTTTGTGGGGGTTTAACAGCAT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcttttaactttgcttacccaagtaacacacttttccaatctgaattcaacagAGTTTGGATGGCCGTGCGCTGAGAGTGAATGTTGCAGAGGAGCGACCACCGCGCCGAGGCTTTTAATGGGATAGCAGGCTTTGTGGGGGTTTAACAGCAT
                      aagtaac  putative branch site (score: 63)
     tttaacttt  TA-rich tract