1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgttatctctttttcttcagtatactcgaaatgttcatactcatccaatgattgcaggctcatattctgtatacttgttttgtaacattttttaaaataattttcacatttgtttgtagGTATAACCCTGCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGCTCCACCTCCGCAACCTTGGTTTACACAACCAGTAGTTTCGGTTCCTCAA
species | Oryza sativa |
transcript | LOC_Os09g38790.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGGGCATGGGATATCCTCCACGACCGGCCTATGGTGTAGCTCCACCTAT GTATAACCCTGCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGCEST: gi|25797175|gb|CA753136.1|CA753136
genomic: GCGGGCATGGTATATCCTCCACGACCGGCCTATGGTGTAGCTCCACCTATgtatgttatc ... ttgtttgtagGTATAACCCTGCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGC
EST: GCGGGCATGGTATATCCTCCACGACCGGCCTATGGTGTAGCTCCACCTAT GTATAACCCTGCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGCEST: gi|29624560|gb|CB629571.1|CB629571
genomic: GCGGGCATGGTATATCCTCCACGACCGGCCTATGGTGTAGCTCCACCTATgtatgttatc ... ttgtttgtagGTATAACCCTGCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGC
EST: GCGGGCATGGTATATCCTCCACGACCGGCCTATGGTGTAGCTCCACCTAT GTATAACCCTGCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGCEST: gi|29630516|gb|CB635525.1|CB635525
genomic: GCGGGCATGGTATATCCTCCACGACCGGCCTATGGTGTAGCTCCACCTATgtatgttatc ... ttgtttgtagGTATAACCCTGCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGC
EST: GCGGGCATGGTATATCCTCCACGACCGGCCTATGGTGTAGCTCCACCTAT GTATAACCCTGCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGC
genomic: GCGGGCATGGTATATCCTCCACGACCGGCCTATGGTGTAGCTCCACCTATgtatgttatc ... ttgtttgtagGTATAACCCTGCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGC
ttctgtatacttgttttgtaacattttttaaaataattttcacatttgtttgtagGTATAACCCTGCACTGAATCCATTGATGGCCAGACCTCCAATCTGGCCTGCTCCACCTCCGCAACCTTGGTTTACACAACCAGTAGTTTCGGTTCCTCAA
ttgtaac putative branch site (score: 19)
tttgttt putative PPT
ttttgtaacatttttt TA-rich tract