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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcttagatccgtgggtttttgtgttagtggttctccgttcgaagtggttttgggcgttctgatcgatttgggggtgttgttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG

Basic information

species Oryza sativa
transcript LOC_Os09g37910.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g37910.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G162284_T02 (Zea mays), 3'ss of exon 3
gtgagtcttagatccgtgggtttttgtgttagtggttctccgttcgaagtggttttgggcgttctgatcgatttgggggtgttgttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG
|||||| | ||| |    ||  || ||        |   |||||  |  ||| |||    |||||||||  ||   ||||  |||||||||||||||| |||||||||||||||||||||||||||||||||| || || || ||||| |||
gtgagtttcagaccacgcggccttcgt--------tctcccgtt--atttggattt---tgttctgatcagtt---gggt-ctgttttttgcagGGAGGAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAATGTGAAACAAGTCTCAGTG

upper sequence: LOC_Os09g37910.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G066528_T02 (Zea mays), 3'ss of exon 3
gtgagtcttagatccgtgggtttttgtgttagtggttctccgttcgaagtggttttgggcgttctgatcgatttgggggtgttgttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG
|||||| |||      ||| |  |   |    | |||||||   ||    | |||||    || |||||| ||   |||| |  |||||  ||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||| |||
gtgagttttat-----tggatcatgcggccttttgttctcccgccgtttggattttg----ttatgatcggtt---gggtctgattttt--cagGGAGGAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAATGTGAAGCAAGTCTCCGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88903838|gb|CI711540.1|CI711540
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|701299|gb|D47590.1|D47590
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|55414429|gb|CV726805.1|CV726805
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|33663560|gb|CF294527.1|CF294527
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|86829841|gb|CI288535.1|CI288535
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|55435413|gb|CV730838.1|CV730838
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|55439165|gb|CV732884.1|CV732884
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|571727|gb|D41238.1|D41238
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|86829652|gb|CI286813.1|CI286813
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|88728459|gb|CI751969.1|CI751969
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTCCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAACCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|33664035|gb|CF295002.1|CF295002
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|572169|gb|D41680.1|D41680
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|88666280|gb|CI716436.1|CI716436
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|701542|gb|D47833.1|D47833
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|33691038|gb|CF319277.1|CF319277
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|33655319|gb|CF277933.1|CF277933
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|15008575|gb|AU222963.1|AU222963
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|33655325|gb|CF277939.1|CF277939
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|88336088|gb|CI647282.1|CI647282
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTCCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|55438827|gb|CV732712.1|CV732712
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|88595104|gb|CI715260.1|CI715260
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|88666063|gb|CI716219.1|CI716219
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|88720160|gb|CI745250.1|CI745250
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCCAACGTCAAGCAGG
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCC-AACGTCAAGCAGG
EST: gi|88352919|gb|CI678953.1|CI678953
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|88341443|gb|CI635641.1|CI635641
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|88409966|gb|CI571223.1|CI571223
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|88904434|gb|CI711742.1|CI711742
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAACCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|163926292|gb|EG712876.1|EG712876
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|33665089|gb|CF296056.1|CF296056
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|88576662|gb|CI670807.1|CI670807
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|33683487|gb|CF311726.1|CF311726
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTCCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|24208407|gb|AU225434.1|AU225434
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|4878390|gb|AU062689.1|AU062689
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|88571600|gb|CI662973.1|CI662973
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|569750|gb|D40599.1|D40599
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|33659238|gb|CF281851.1|CF281851
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|11863289|gb|AU065278.2|AU065278
EST:     AAGGANCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCANGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|33665399|gb|CF296366.1|CF296366
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|33823174|gb|CF337387.1|CF337387
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         G
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcag-
EST: gi|33823174|gb|CF337387.1|CF337387
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         G
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcag-
EST: gi|55437048|gb|CV731721.1|CV731721
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|88955287|gb|CI721859.1|CI721859
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
EST: gi|33662889|gb|CF293856.1|CF293856
EST:     AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCTTTCTTCGTGTTCAT                         GGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT
genomic: AAGGACCCGAACAAGCCGAAGAGGCCACCGAGCGCGTTCTTCGTGTTCATgtgagtctta ... ttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgttcgaagtggttttgggcgttctgatcgatttgggggtgttgttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG
                      ttctgat  putative branch site (score: 3)
                                          ttgtttttt  putative PPT
                                          ttgtttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtcttagatccgtgggtttttgtgttagtggttctccgttcgaagtggttttgggcgttctgatcgatttgggggtgttgttttttgcagGGAGCAGTTCAGGAAGGACTACAAGGAGAAGCACCCCAACGTCAAGCAGGTCTCGGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC