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gtatgcttacccattctttaaactatcatctactcgctgaagaaaactcatgcacttgaacagcatcaatgctagcttatctcatatttctcatcttcctcttattctttgttagATTGATTGGCTGAATAGATTTTTGGAGATGATGTGGCCTTACCTCAACAAG
species | Oryza sativa |
transcript | LOC_Os09g36770.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTATCCTTCCTGAAATTCCTTTGTGGGTCAAGAATCCTGACTATGATAGA ATTGATTGGCTGAATAGATTTTTGGAGATGATGTGGCCTTACCTCAACAAGEST: gi|58604626|gb|CK015154.1|CK015154
genomic: GTATCCTTCCTGAAATTCCTTTGTGGGTCAAGAATCCTGACTATGATAGAgtatgcttac ... tctttgttagATTGATTGGCTGAATAGATTTTTGGAGATGATGTGGCCTTACCTCAACAAG
EST: GTATCCTTCCTGAAATTCCTTTGTGGGTCAAGAATCCTGACTATGATAGA ATTGATTGGCTGAATAGAATTTTTGGAGATTGATGTGGCCTTACCEST: gi|58662477|gb|CK051163.1|CK051163
genomic: GTATCCTTCCTGAAATTCCTTTGTGGGTCAAGAATCCTGACTATGATAGAgtatgcttac ... tctttgttagATTGATTGGCTGAATAGA-TTTTTGGAGAT-GATGTGGCCTTACC
EST: GTATCCTTCCTGAAATTCCTTTGTGGGTCAAGAATCCTGACTATGATAGA ATTGATTGGCTGAATAGATTTTTGGAGATGATGTGGCCTTACCTCAACAAGEST: gi|58664748|gb|CK053434.1|CK053434
genomic: GTATCCTTCCTGAAATTCCTTTGTGGGTCAAGAATCCTGACTATGATAGAgtatgcttac ... tctttgttagATTGATTGGCTGAATAGATTTTTGGAGATGATGTGGCCTTACCTCAACAAG
EST: GTATCCTTCCTGAAATTCCTTTGTGGGTCAAGAATCCTGACTATGATAGA ATTGATTGGCTGAATAGATCTTTGGAGATGATGTGGCCTTACCTCAACAAG
genomic: GTATCCTTCCTGAAATTCCTTTGTGGGTCAAGAATCCTGACTATGATAGAgtatgcttac ... tctttgttagATTGATTGGCTGAATAGATTTTTGGAGATGATGTGGCCTTACCTCAACAAG
cagcatcaatgctagcttatctcatatttctcatcttcctcttattctttgttagATTGATTGGCTGAATAGATTTTTGGAGATGATGTGGCCTTACCTCAACAAG
cttatctcatatttct CT-rich tract
ttattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcttacccattctttaaactatcatctactcgctgaagaaaactcatgcacttgaacagcatcaatgctagcttatctcatatttctcatcttcctcttattctttgttagATTGATTGGCTGAATAGATTTTTGGAGATGATGTGGCCTTACCTCAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG