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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtctcttgttctgtccccttgaaatatagacagcataagtagcattcagcatgttgatgtttattcgttgcacatttgatttcttctctttatttgatgatatttactgcaccatttctgcagTTCTTTTTAATATATATGGCCCAGCTGTTGAAGAAGATGATATAGAACGAGTTCGCTTTAAGCTACTATTTTACAAGATACTACAG

Basic information

species Oryza sativa
transcript LOC_Os09g36530.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g36530.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G103458_T01 (Zea mays), 3'ss of exon 3
gttggtctcttgttctgtccccttgaaatatagacagcataagtagcattcagcatgttgatgtttattcgttgcacatttgatttcttctctttatttgatgatatt--tactgcaccatttctgcagTTCTTTTTAATATATATGGCCCAGCTGTTGAAGAAGATGATATAGAACGAGTTCGCTTTAAGCTACTATTTTACAAGATACTACAG
||  ||  ||||||     ||||||| |   | | | |||||    |  |     | || ||| || ||  ||||| ||||  ||| |  | | | | |  | ||  |  | |  ||| | || |  ||||||||| || ||||| |||||||||||||| | |||||||| ||| || ||||| |||||||||||||||||||||||||| |||
gtaagtagcttgtt-----cccttgataggaacataacataac---cgcttgcatttttcatgctt-tttattgcatatttattttttgttttgtctgtagtaatgataatgcctcactacttgtttagTTCTTTTCAACATATACGGCCCAGCTGTTGACGGAGATGATAAAGAGCGTGTTCGTTTTAAGCTACTATTTTACAAGATACTGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcacatttgatttcttctctttatttgatgatatttactgcaccatttctgcagTTCTTTTTAATATATATGGCCCAGCTGTTGAAGAAGATGATATAGAACGAGTTCGCTTTAAGCTACTATTTTACAAGATACTACAG
                       atttgat  putative branch site (score: 5)
                                           ccatttct  putative PPT
                    tttatttgatgatatt  TA-rich tract