1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtagttactattgctttgctgatacttcttgacttggcccatagtctgttaggttctattctcatgtttgctgcatggttttcttgcacagGACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTCCTTGATGAGGCTGATGAGATGCTTAATATGGGCTTCGTTGATGATGTTG
species | Oryza sativa |
transcript | LOC_Os09g34910.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATCAGAAAGGGGGTTGACATTGTTGTTGGAACTCCTGGTCGTGTGAAG GACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTCEST: gi|218497043|gb|FG966022.1|FG966022
genomic: CAATCAGAAAGGGGGTTGACATTGTTGTTGGAACTCCTGGTCGTGTGAAGgtagttacta ... tcttgcacagGACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTC
EST: CAATCAGAAAGGGGGTTGACATTGTTGTTGGAACTCCTGGTCGTGTGAAG GACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTTCGTGTCEST: gi|218490351|gb|FG949890.1|FG949890
genomic: CAATCAGAAAGGGGGTTGACATTGTTGTTGGAACTCCTGGTCGTGTGAAGgtagttacta ... tcttgcacagGACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTC
EST: CATTGTTGTTGGAACTCCTGGTCGTGTGAAG GACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTCEST: gi|29679593|gb|CB675868.1|CB675868
genomic: CATTGTTGTTGGAACTCCTGGTCGTGTGAAGgtagttacta ... tcttgcacagGACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTC
EST: CAATCAGAAAGGGGGTTGACATTGTTGTTGGAACTCCTGGTCGTGTGAAG GACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTCEST: gi|12693420|gb|AU173553.1|AU173553
genomic: CAATCAGAAAGGGGGTTGACATTGTTGTTGGAACTCCTGGTCGTGTGAAGgtagttacta ... tcttgcacagGACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTC
EST: CAATCAGAAAGGGGGTTGACATTGTTGTTGGAACTCCTGGTCGTGTGAAG GACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTCEST: gi|29628388|gb|CB633399.1|CB633399
genomic: CAATCAGAAAGGGGGTTGACATTGTTGTTGGAACTCCTGGTCGTGTGAAGgtagttacta ... tcttgcacagGACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTC
EST: CAATCAGAAAGGGGGTTGACATTGTTGTTGGAACTCCTGGTCGTGTGAAG GACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTCEST: gi|218505159|gb|FG963489.1|FG963489
genomic: CAATCAGAAAGGGGGTTGACATTGTTGTTGGAACTCCTGGTCGTGTGAAGgtagttacta ... tcttgcacagGACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTC
EST: CAATCAGAAAGGGGGTTGACATTGTTGTTGGAACTCCTGGTCGTGTGAAG GACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTCEST: gi|25802299|gb|CA758260.1|CA758260
genomic: CAATCAGAAAGGGGGTTGACATTGTTGTTGGAACTCCTGGTCGTGTGAAGgtagttacta ... tcttgcacagGACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTC
EST: CAATCAGAAAGGGGGTTGACATTGTTGTTGGAACTCCTGGTCGTGTGAAG GACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTC
genomic: CAATCAGAAAGGGGGTTGACATTGTTGTTGGAACTCCTGGTCGTGTGAAGgtagttacta ... tcttgcacagGACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTC
gcccatagtctgttaggttctattctcatgtttgctgcatggttttcttgcacagGACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTCCTTGATGAGGCTGATGAGATGCTTAATATGGGCTTCGTTGATGATGTTG
ttttcttgc CT-rich tract
ttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagttactattgctttgctgatacttcttgacttggcccatagtctgttaggttctattctcatgtttgctgcatggttttcttgcacagGACTTTGTTGAAAAGGGAACCCTCAATTTTAGGTCTTTGAAATTCCGTGTCCTTGATGAGGCTGATGAGATGCTTAATATGGGCTTCGTTGATGATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG