1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttatctatccactgggtgctcctaccacctgtaacaccaaagtttatgagtaaatgtggttttgatatttttggtttatgaattttgtttgtttaactagGTGATTGGTTCTGCAAAGGATAGGGATAGAATTCCAGGCATTGACATAACTCTTAGTGAGGGTGACACATGGATGTTTGCTGGTCATCAAGTTCTTGTAA
species | Oryza sativa |
transcript | LOC_Os09g34100.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGACCATACTGGTGGCAACTTGGAACTGAAGGCAAAATATGGTGCAAAG GTGATTGGTTCTGCAAAGGATAGGGATAGAATTCCAGGCATTGACATAACTEST: gi|396941317|gb|HO188526.1|HO188526
genomic: ATGACCATACTGGTGGCAACTTGGAACTGAAGGCAAAATATGGTGCAAAGgtatgcacat ... gtttaactagGTGATTGGTTCTGCAAAGGATAGGGATAGAATTCCAGGCATTGACATAACT
EST: ATGACCATACTGGTGGCAACTTGGAACTGAAGGCAAAATATGGTGCAAAG GTGATTGGTTCTGCAAAGGATAGGGATAGAATTCCAGGCATTGACATAACTEST: gi|33682471|gb|CF310710.1|CF310710
genomic: ATGACCATACTGGTGGCAACTTGGAACTGAAGGCAAAATATGGTGCAAAGgtatgcacat ... gtttaactagGTGATTGGTTCTGCAAAGGATAGGGATAGAATTCCAGGCATTGACATAACT
EST: ATGACCATACTGGTGGCAACTTGGAACTGAAGGCAAAATATGGTGCAAAG GTGATTGGTTCTGCAAAGGATAGGGATAGAATTCCAGGCATTGACATAACTEST: gi|29645568|gb|CB650575.1|CB650575
genomic: ATGACCATACTGGTGGCAACTTGGAACTGAAGGCAAAATATGGTGCAAAGgtatgcacat ... gtttaactagGTGATTGGTTCTGCAAAGGATAGGGATAGAATTCCAGGCATTGACATAACT
EST: ATGACCATACTGGTGGCAACTTGGAACTGAAGGCAAAATATGGTGCAAAG GTGATTGGTTCTGCAAAGGATAGGGATAGAATTCCAGGCATTGACATAACTEST: gi|33680534|gb|CF308773.1|CF308773
genomic: ATGACCATACTGGTGGCAACTTGGAACTGAAGGCAAAATATGGTGCAAAGgtatgcacat ... gtttaactagGTGATTGGTTCTGCAAAGGATAGGGATAGAATTCCAGGCATTGACATAACT
EST: ATGACCATACTGGTGGCAACTTGGAACTGAAGGCAAAATATGGTGCAAAG GTGATTGGTTCTGCAAAGGATAGGGATAGAATTCCAGGCATTGACATAACT
genomic: ATGACCATACTGGTGGCAACTTGGAACTGAAGGCAAAATATGGTGCAAAGgtatgcacat ... gtttaactagGTGATTGGTTCTGCAAAGGATAGGGATAGAATTCCAGGCATTGACATAACT
atgagtaaatgtggttttgatatttttggtttatgaattttgtttgtttaactagGTGATTGGTTCTGCAAAGGATAGGGATAGAATTCCAGGCATTGACATAACTCTTAGTGAGGGTGACACATGGATGTTTGCTGGTCATCAAGTTCTTGTAA
ttttgat putative branch site (score: 64)
tttgttt putative PPT
ttttgatatttttggt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatctatccactgggtgctcctaccacctgtaacaccaaagtttatgagtaaatgtggttttgatatttttggtttatgaattttgtttgtttaactagGTGATTGGTTCTGCAAAGGATAGGGATAGAATTCCAGGCATTGACATAACTCTTAGTGAGGGTGACACATGGATGTTTGCTGGTCATCAAGTTCTTGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - -gtgctcc
- - - - - - - - - - - - -cacctgt
- - - - - - - - - - - - - - - - - caccaaa