1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cacttggaagtgttcaagctaatgcaaatatgcacttctgaatgttcaggatgctcccagtattgctatctaaattattgctgcccatttgtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAACTGCTCTCCAACACTCTGTACTACAAGCGATTCTTCCCATATTATGCTT
species | Oryza sativa |
transcript | LOC_Os09g32800.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|58599894|gb|CK010422.1|CK010422
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCGCAAEST: gi|218499612|gb|FG949767.1|FG949767
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCGCAAEST: gi|33818104|gb|CF334878.1|CF334878
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|38472549|gb|CF956681.1|CF956681
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCGCAAEST: gi|33678412|gb|CF306651.1|CF306651
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|33660627|gb|CF291594.1|CF291594
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|33683337|gb|CF311576.1|CF311576
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|38477362|gb|CF961495.1|CF961495
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCGCAAEST: gi|58694905|gb|CK083592.1|CK083592
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCGCAAEST: gi|55439808|gb|CV733214.1|CV733214
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|33681495|gb|CF309734.1|CF309734
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|33683521|gb|CF311760.1|CF311760
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|66915431|gb|CX102279.1|CX102279
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCGCAAEST: gi|58593878|gb|CF992186.1|CF992186
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCGCAAEST: gi|86592540|gb|CI253221.1|CI253221
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: ACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|55413999|gb|CV726375.1|CV726375
genomic: ACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|218497460|gb|FG955186.1|FG955186
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCGCAAEST: gi|87023706|gb|CI286457.1|CI286457
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|33823301|gb|CF337451.1|CF337451
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCGGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|33803800|gb|CF327774.1|CF327774
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|86593079|gb|CI255541.1|CI255541
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|86503207|gb|CI145840.1|CI145840
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|56158103|gb|C73010.2|C73010
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|87035374|gb|CI189996.1|CI189996
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: AGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|58667664|gb|CK056350.1|CK056350
genomic: AGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCGCAAEST: gi|55412184|gb|CV724560.1|CV724560
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAAEST: gi|58674446|gb|CK063132.1|CK063132
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTEST: gi|33818151|gb|CF334904.1|CF334904
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCT
EST: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTG CTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
genomic: TCCAAGGTGATATCAAAGCTCTGCACAAGAACTTGGCTGCCAGAGAATTGgtaagttccc ... gtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAA
tcaggatgctcccagtattgctatctaaattattgctgcccatttgtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAACTGCTCTCCAACACTCTGTACTACAAGCGATTCTTCCCATATTATGCTT
atctaaa putative branch site (score: 73)
tttgttttt putative PPT
tatctaaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacttggaagtgttcaagctaatgcaaatatgcacttctgaatgttcaggatgctcccagtattgctatctaaattattgctgcccatttgtttttgtagCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAACTGCTCTCCAACACTCTGTACTACAAGCGATTCTTCCCATATTATGCTT
- - - - - - - - - -taatgca
- - - - - - - - - - - - - - tatgcac
- - - - - - - - - - - - - - - - - - -ctgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tattgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgcc