1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtttgatattctgctgtatggcctgttttgtttttatttactggcatcactttatttatgaagcctgtagttcacttggcctctgtcatccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACCCAATCGAATTTGAGTTGGGCACTGGCCAAGTGATCAAAG
species | Oryza sativa |
transcript | LOC_Os09g32526.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|88376918|gb|CI639243.1|CI639243
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|88733695|gb|CI756872.1|CI756872
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|163925746|gb|EG714582.1|EG714582
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGC GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|55432912|gb|CV729479.1|CV729479
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|88827078|gb|CI777643.1|CI777643
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|5004128|gb|AU069277.1|AU069277
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|33687579|gb|CF315818.1|CF315818
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|66928292|gb|CX115140.1|CX115140
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGTGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGTTTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|218484090|gb|FG956007.1|FG956007
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGTGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGTTTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|163927898|gb|EG713510.1|EG713510
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|58678099|gb|CK066786.1|CK066786
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGTGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGTTTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|88375448|gb|CI681220.1|CI681220
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|88739216|gb|CI762724.1|CI762724
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|58676104|gb|CK064791.1|CK064791
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGTGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAG-TGGGTGATTCTAGCTATGAAAGAGGTGAEST: gi|86903638|gb|CI300492.1|CI300492
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTT-TGATTCTAGCTATGAAAGAGGTGA
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|38480031|gb|CF964120.1|CF964120
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CAGAGTT-AAG-TCACTA-CGT GGAAAACTTACTGATGGAACAGTTTTTGATGCGTGGGCTATGAAAGAGGTGEST: gi|33686364|gb|CF314603.1|CF314603
genomic: CAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTC-T-AGCTATGAAAGAGGTG
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|88347332|gb|CI632617.1|CI632617
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|89168554|gb|CI038908.1|CI038908
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|88574137|gb|CI665906.1|CI665906
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|218491364|gb|FG953091.1|FG953091
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGTGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGTTTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|163920086|gb|EG709856.1|EG709856
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|88576196|gb|CI670341.1|CI670341
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|88332240|gb|CI643657.1|CI643657
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACEST: gi|10794952|gb|AU108918.1|AU108918
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
EST: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGT GGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
genomic: CCTGCAGCATTCAAGCTCACAAAGGCGACAGAGTTAAAGTTCACTACCGTgtaagtttga ... ccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGAC
catcactttatttatgaagcctgtagttcacttggcctctgtcatccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACCCAATCGAATTTGAGTTGGGCACTGGCCAAGTGATCAAAG
tccattt CT-rich tract
tttatttatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttgatattctgctgtatggcctgttttgtttttatttactggcatcactttatttatgaagcctgtagttcacttggcctctgtcatccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACCCAATCGAATTTGAGTTGGGCACTGGCCAAGTGATCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG