1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctgtagggaacacctggtggacatttatgcattagcatttatcttatgtttgccaattatatataaattgatgaggtgttctgtgataaccaaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGGACCTACTTGGCGTGAAGGGCGCAAACAGGGAATCCCCAGGATCAAATG
species | Oryza sativa |
transcript | LOC_Os09g31970.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAAATGATGGCAAAGATCTTCATATCTCCGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|88243397|gb|CI244519.1|CI244519
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|8594840|gb|AU093378.1|AU093378
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: GTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGAAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|29638806|gb|CB643815.1|CB643815
genomic: GTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|218499333|gb|FG949280.1|FG949280
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCCGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|218489098|gb|FG949712.1|FG949712
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCCGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|86488855|gb|CI131488.1|CI131488
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCTGTTACCATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|87009979|gb|CI277480.1|CI277480
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|87026089|gb|CI250105.1|CI250105
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|88577750|gb|CI674358.1|CI674358
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|86504280|gb|CI146913.1|CI146913
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|29674292|gb|CB670567.1|CB670567
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|89169964|gb|CI039241.1|CI039241
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|58667229|gb|CK055915.1|CK055915
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCCGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|88344356|gb|CI677394.1|CI677394
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|218486101|gb|FG952696.1|FG952696
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCCGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|89192976|gb|CI050274.1|CI050274
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|89184185|gb|CI046750.1|CI046750
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|55408271|gb|CV720647.1|CV720647
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCCGTTACTATGCCATCAATTGAG GTGGTCTCGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|86908142|gb|CI300644.1|CI300644
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|88225016|gb|CI224932.1|CI224932
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATGTTCATATCTCTGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|86492324|gb|CI134957.1|CI134957
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGEST: gi|86414947|gb|CI069350.1|CI069350
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
EST: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAG GTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
genomic: TAAATGATGGCAAAGATCTTCATATCTCTGTTACTATGCCATCAATTGAGgtattatatt ... caaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTG
atgtttgccaattatatataaattgatgaggtgttctgtgataaccaaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGGACCTACTTGGCGTGAAGGGCGCAAACAGGGAATCCCCAGGATCAAATG
tgataac putative branch site (score: 41)
aattatatataaattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtagggaacacctggtggacatttatgcattagcatttatcttatgtttgccaattatatataaattgatgaggtgttctgtgataaccaaaatgcagGTGGGCACGGTTGGTGGAGGCACACAGCTGGCCTCACAGTCTGCTTGCTTGGACCTACTTGGCGTGAAGGGCGCAAACAGGGAATCCCCAGGATCAAATG
- - - - - - cctggtg
- - - - - - - - - - - - ttatgca
- - - - - - - - - - - - - - - - - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttctg