1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgggaattctgtgcttatttcttccatctacgaagagtgtgaaggttgaaatcgtcagcattaaactgatgtctgttctaccatttaacttgttttcagGTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGCCAGGCAGACCCTCTGAAATTTTTGTATCCTTTAGAATCTGGCATAAAGGAGAAGATTGAGT
species | Oryza sativa |
transcript | LOC_Os09g27420.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTTTGATGCTGTTGTCTGCACTCACCATGCGCATGGTGGTAAAGGAGCG GTCGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGCCAGGCAGACCCTEST: gi|58689176|gb|CK077863.1|CK077863
genomic: CTTTTGATGCTGTTGTCTGCACTCACCATGCGCATGGTGGTAAAGGAGCGgttagttttc ... ttgttttcagGTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGCCAGGCAGACCCT
EST: CTTTTGATGCTGTTGTCTGCACTCACCATGCGCATGGTGGTAAAGGAGCG GTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGCCAGGCAGACCCTEST: gi|87010814|gb|CI312506.1|CI312506
genomic: CTTTTGATGCTGTTGTCTGCACTCACCATGCGCATGGTGGTAAAGGAGCGgttagttttc ... ttgttttcagGTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGCCAGGCAGACCCT
EST: GTAAAGGAGCG GTTGATCTTGGACTCGCGGTTCAACGNGCATGTGAGAGCCAGGCAGACCCTEST: gi|86436750|gb|CI118472.1|CI118472
genomic: GTAAAGGAGCGgttagttttc ... ttgttttcagGTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGCCAGGCAGACCCT
EST: GATGCTGTTGTCTGCACTCACAATGCGCATGGTGGTAAAGGAGCG GTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGCCAGGCAGACCCTEST: gi|90398849|gb|AJ608757.1|AJ608757
genomic: GATGCTGTTGTCTGCACTCACCATGCGCATGGTGGTAAAGGAGCGgttagttttc ... ttgttttcagGTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGCCAGGCAGACCCT
EST: CTTTTGATGCTGTTGTCTGCACTCACCATGCGCATGGTGGTAAAGGAGCG GTTGATCTTGGACTCGCGGTTCAACAGGCAT-TGAGAGCCAGGCAGACCCTEST: gi|58691862|gb|CK080549.1|CK080549
genomic: CTTTTGATGCTGTTGTCTGCACTCACCATGCGCATGGTGGTAAAGGAGCGgttagttttc ... ttgttttcagGTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGCCAGGCAGACCCT
EST: CTTTTGATGCTGTTGTCTGCACTCACCATGCGCATGGTGGTAAAGGAGCG GTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGEST: gi|86517665|gb|CI157871.1|CI157871
genomic: CTTTTGATGCTGTTGTCTGCACTCACCATGCGCATGGTGGTAAAGGAGCGgttagttttc ... ttgttttcagGTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAG
EST: GCTGTTGTCTGCACTCACCATGCGCATGGTGGTAAAGGAGCG GTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGCCAGGCAGACCCTEST: gi|29685663|gb|CB681938.1|CB681938
genomic: GCTGTTGTCTGCACTCACCATGCGCATGGTGGTAAAGGAGCGgttagttttc ... ttgttttcagGTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGCCAGGCAGACCCT
EST: CTTTTGATGCTGTTGTCTGCACTCACCATGCGCATGGTGGTAAAGGAGCG GTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGCCAGGCAGACCCTEST: gi|62936912|gb|AJ634725.1|AJ634725
genomic: CTTTTGATGCTGTTGTCTGCACTCACCATGCGCATGGTGGTAAAGGAGCGgttagttttc ... ttgttttcagGTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGCCAGGCAGACCCT
EST: CTTTTGATGCTGTTGTCTGCACTCACCATGCGCATGGTGGTAAAGGAGCG GTTGATCTTGGACTCGCGGTTCAACAGGCATGTGAGAGCCAGGCAGACCCT
genomic: CTTTTGATGCTGTTGTCTGCACTCACCATGCGCATGGTGGTAAAGGAGCGgttagttttc ... ttgttttcagGTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGCCAGGCAGACCCT
gttgaaatcgtcagcattaaactgatgtctgttctaccatttaacttgttttcagGTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGCCAGGCAGACCCTCTGAAATTTTTGTATCCTTTAGAATCTGGCATAAAGGAGAAGATTGAGT
atttaac putative branch site (score: 51)
cttgttttc CT-rich tract
atttaacttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgggaattctgtgcttatttcttccatctacgaagagtgtgaaggttgaaatcgtcagcattaaactgatgtctgttctaccatttaacttgttttcagGTTGATCTTGGACTCGCGGTTCAACGGGCATGTGAGAGCCAGGCAGACCCTCTGAAATTTTTGTATCCTTTAGAATCTGGCATAAAGGAGAAGATTGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA