ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtcagcataacatgctccaacatatccacatttgattataacatgtatcttctgtcacctcacatgattcatattgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTTGAAAATACAGAAAACCAAGGACAAGTCAGCCTCAAAGTAGACAACTCTT

Basic information

species	Oryza sativa
transcript	LOC_Os09g24690.1
intron #	3
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: LOC_Os09g24690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G166963_T01 (Zea mays), 3'ss of exon 3

gtcagcataacatgctccaacatatccacatttgattat----aacatgta---tcttctgtcacctc-acatgatt-catattgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTTGAAAATACAGAAAACCAAGGACAAGTCAGCCTCAAAGTAGACAACTCTT-
|| |||| || | | | | | ||||    ||||||| |     ||  || |      | ||| ||| | ||||| || || | || || |||||||||| ||||||||| |||||||||||||||||||||| ||||| || |||||| ||||||| ||||| |||||| |  |||||||  ||  ||||||  
gttagca-aata-gtttccatatattttgatttgataaccctaaagttgcaaacctctatgtaacccccacatgttttcacactgtcttgcagGATCATCCGTGCTTTCCTGGTTGAAGAGCAGAAGATTGTCAAGAAGGTGTTGAAATTACAGAAGACCAAAGACAAGACTTCCTCAAAAAAG-TAACTCTGA

upper sequence: LOC_Os09g24690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA08G41280.1 (Glycine max), 3'ss of exon 3

----------gtcag-cataacatgctccaacatatccacatttgattata-acatgtatcttctgtcac-ctcacatgattcatattgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTTGAAAATACAGAAAACCAAGGACAAGTCAGCCTCAAAGTAGACAACTCTT-
           |||  | |   |  || ||  || |  |  |||  || |  | ||  ||    |  |   || || |   || | | |    | || |||||||| |||||||||||||||||||| ||||||||||| || || ||||| || || || || ||||| |||  ||| |  |||  |   | | || 
gtttgtttttctcaatcttcttaatctacagtatgtttaattttctttgtgcaaattgatggagtaccttgcttacttttgtc-tctggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATTGAAGATCCAAAAGACAAAGGAAAAGCAAGCTTTGAAG-GGCTGAGTTTTG

upper sequence: LOC_Os09g24690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA02G11920.1 (Glycine max), 3'ss of exon 3

-----------------gtcagcataacatgctccaacatatccacat---ttgattataacatgtatct--tctgtcacctcacatgattcatatt--gcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTTGAAAATACAGAAAACCAAGGACAAGTCAGCCTCAAAGTAGACAACTCTT
                  | |   | | ||  |   |   |  | |||   || ||||||   |  |  |  | | |  | |    | |||  | |   |      ||||| || || |||||||| ||||||||||| |||||||||||||| |||||||| || |||||  | ||||| |||  ||||||||||     || |   
gtttgttttactctacttttacagttatatatttataataactcgcatgatttaattatatggtaaagttggtttatagcatgcttttatttgtgtctggttctatagGATTATCCGAGCTTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTTGAAGATCCAGAAGGCAAAGGAAAAGCAAGCCTCAAAGGCTTGAATTTGA

upper sequence: LOC_Os09g24690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA09G37360.1 (Glycine max), 3'ss of exon 3

----gtcagcataacatgctccaacatatccacatttgattataacatgtatcttctgtcacctcaca-tgattcatattgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTTGAAAATACAGAAAACCAAGGACAAGTCAGCCTCAAAGTAGACAACTCTT
    ||  ||  || | |     | || |     || ||  ||    | ||  |   || |  | |||   ||| || |        ||||| |||||||||||| ||||||||||||| || |||||||| || || ||||| || |||||  | || || |||   || ||||||     | || ||
gtatgtt-gctcaaaaagtctttagatgtttttgtt-gaaaattttct-tagttgaagtaaatttacagccatttat-tcatggtatagGATTATTCGTGCTTTCCTGGTTGAAGAGCAAAAAATTGTGAAAAAGGTATTGAAGATCCAGAAGGCAAAAGAAAAGCAGGCATCAAAGAGTTAAGCTGTT

upper sequence: LOC_Os09g24690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA18G14980.1 (Glycine max), 3'ss of exon 3

-----------gtcagcataacatgctccaacatatccacatttgattat---aacatgtatcttctgtcacctcacatgattcatattgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTTGAAAATACAGAAAACCAAGGACAAGTCAGCCTCAAAGTAGACAACTCTT
            |||   |  | |  || |  ||    |  ||| ||| |   ||   ||    |   |  | |    |  |   |  |  ||   || |||||||| |||||||||||||||||||| ||||||||||| || |||||||| || || || || ||||| ||   ||| |  |||  |   | | ||
ggtttgtttttctcaatttt-cttagtctactatgcttaattttcattgtgcaaattagtggagtaccttgcttacttttgtctctggt-tctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCTTGAAGATCCAAAAGACAAAGGAAAAACAAGCTTTGAAG-GGCTGAGTTTT

upper sequence: LOC_Os09g24690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA01G05740.1 (Glycine max), 3'ss of exon 3

gtcagcataacatgctccaacatatccacatttgattataacatgtatcttctgtcacctcacatg-attcatatt--gcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTTGAAAATACAGAAAACCAAGGACAAGTCAGCCTCAAAGTAGACAACTCTT
||  |  | ||  |       | | | | || | || |||||  ||||  | |      |  | |  ||| || |   |      ||||| || || || ||||| ||||||||||| |||||||||||||| |||||||| || |||||  | ||||| |||   |||||||||     || |   
gtttgttttactagacttttaacagctatatattataataactcgtatgatttaattgtttgcttacatttatctctggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTTGAAGATCCAGAAGGCAAAGGAAAAGCAGGCCTCAAAGGCTTGAATTTGA

upper sequence: LOC_Os09g24690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT3G28900.1 (Arabidopsis thaliana), 3'ss of exon 3

gtcagcataacatgctccaacatatccacatttgattataacatgtatcttctgtcacctcacatgattcatattgcc-tcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTTGAAAATACAGAAAACCAAGGACAAGTCAGCCTCAAAG---TAGACAACTCTT
|| ||  ||   ||     || | |  | | ||| ||      | ||   | |  || || |  | | || | |  |  |  ||||||| |  | || |||||||||||||| ||||||||||||||||| || |||||  | |||||  | || || ||| | ||  |||||   ||||  |     
gtaagtgta--ttgtaaagacctcttaaaaattggtttc----tttagagtattgcaactaatcttactcttttctctgttccagGATCGTCAGGGCCTTCTTGGTTGAAGAACAGAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAGGCGAAAGAGAAGACTGCACCAAAGAGTTAGAAGAAA---

upper sequence: LOC_Os09g24690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT1G26880.1 (Arabidopsis thaliana), 3'ss of exon 3

gtcagcataacatgctcc--aacatatccacatttgattataacatgtatcttctgtcacctcacatgattcatattgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTTGAAAATACAGAAAACCAAGGACAAGTCAGCCTCAAAGTAGACAACTCTT
||  |     |||  | |   |   |||    | | |  ||||  |   | |||| | || | |  |  ||  |     |   |||||||||||| || ||| | || |||||||| ||||||||||||||||| |||||| | || ||  | ||||| ||   |||| | |||     | || ||
gtttgttgtccatcttacttgagtcatctttctattacaataaatttggtgttctttaacgtaatgttgtttttggattccgacagGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAGAAAGTGTTGAAACTCCAAAAGGCTAAGGAGAAAGTAGCCCCCAAGGCTTAAGCTTTT

upper sequence: LOC_Os09g24690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv14s0108g00850.t01 (Vitis vinifera), 3'ss of exon 3

gtcagcataacatgctccaacatatccacatttgattataacatgtatcttctgtcacctcacatgattcatattgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTTGAAAATACAGAAAACCAAGGACAAGTCAGCCTCAAAG--TAGACAACTCTT
       |||     | |||    |  |  || | || | |  || |     ||     |    ||||| |||     |  |||||| ||||| ||||||||||| || ||||| ||||||||||| || || ||||| || |||||  | ||||| |||  ||||||||||  | || || |   
------gtaaatgatttcaa---gtttat-ttcgtttcttaactgcactagttggggttt----tgattaataacttttt-cagGATAATTCGAGCTTTCTTGGTGGAGGAGCAAAAGATTGTGAAAAAGGTGTTGAAGATCCAGAAGGCAAAGGAAAAGCAAGCCTCAAAGAGTTGAAAAATG--

upper sequence: LOC_Os09g24690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S39_344V6.1 (Physcomitrella patens), 3'ss of exon 3

-----------------gtcagcataacatgctccaacatatccacatt-tgattataacatgtatcttctgtcacctcacatgattcatattgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTTGAAAATACAGAAAACCAAGGACAAGTCAGCCTCAAAGTAGACAACTCTT--
                  ||    ||||| | ||     | |   | || ||   ||  | || ||| | | |  | |  |   |   |       | |||| |||||||| |||||| | || || |||||||||||||||||||||||  |||| || |||||  | ||||| || |  ||  | ||  |    | ||||  
attagtcattgtctgatttctttttaaca-gttctgttgtgttggccttctgggcatg-cttggatcatgttttgcatttctgaaccaagtaaattttgcagCATCATTCGCGCTTTCCTTGTCGAGGAGCAGAAGATTGTGAAGAAAGTACTGAAGATCCAGAAGTCAAAGGAGAAATTGGCTGCTAA--AACTCAGTCTTAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|88975429|gb|CI023680.1|CI023680

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|88902392|gb|CI087930.1|CI087930

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|88961791|gb|CI096951.1|CI096951

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|86482848|gb|CI125481.1|CI125481

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|55435797|gb|CV731034.1|CV731034

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|27576721|gb|CA999415.1|CA999415

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|33690860|gb|CF319099.1|CF319099

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|88212826|gb|CI210677.1|CI210677

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|87016834|gb|CI284168.1|CI284168

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|58680978|gb|CK069665.1|CK069665

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|86596546|gb|CI284857.1|CI284857

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|58668332|gb|CK057018.1|CK057018

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTC
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTC

EST: gi|86257931|gb|CI064284.1|CI064284

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|88955852|gb|CI092141.1|CI092141

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|87033868|gb|CI188492.1|CI188492

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|86533492|gb|CI173698.1|CI173698

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|88209963|gb|CI209812.1|CI209812

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|86532768|gb|CI172974.1|CI172974

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGACTTGTGAAGAAAGTCT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGA-TTGTGAAGAAAGTC-

EST: gi|87032333|gb|CI264114.1|CI264114

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|33671984|gb|CF300223.1|CF300223

EST:     TATGGTGGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: TATGGT-GGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|89165100|gb|CI255157.1|CI255157

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|86532764|gb|CI172970.1|CI172970

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|88209241|gb|CI208667.1|CI208667

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTACTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTT-CTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCT

EST: gi|2311911|gb|C28066.1|C28066

EST:     ACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGNTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: ACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|88207178|gb|CI207027.1|CI207027

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|33669976|gb|CF298215.1|CF298215

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|88213746|gb|CI213595.1|CI213595

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|88211494|gb|CI211134.1|CI211134

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|88237022|gb|CI236871.1|CI236871

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|88224604|gb|CI222784.1|CI222784

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|33660429|gb|CF291396.1|CF291396

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|58589260|gb|CF987568.1|CF987568

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|55431812|gb|CV728926.1|CV728926

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|86597221|gb|CI280358.1|CI280358

EST:     GTGAACCGTCCCTATGTTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|29686974|gb|CB683249.1|CB683249

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCTTTTTTGGAAAG                         GATCATTCATGCTTTCTTGGTTGAAGAGCATAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|38480922|gb|CF965011.1|CF965011

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|10930619|gb|AU160893.1|AU160893

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|55441850|gb|CV734251.1|CV734251

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|88207013|gb|CI206862.1|CI206862

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|33815301|gb|CF333502.1|CF333502

EST:     GTGAACCGTCCCTATGGTGGGGTGCACTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|44676042|gb|CR289476.1|CR289476

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|88212873|gb|CI210724.1|CI210724

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|11172025|gb|AU164079.1|AU164079

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|33669977|gb|CF298216.1|CF298216

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|86533592|gb|CI173798.1|CI173798

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|10931469|gb|AU161743.1|AU161743

EST:     GTGAACCGTCCCTAT-GTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|88208657|gb|CI208506.1|CI208506

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|33815521|gb|CF333613.1|CF333613

EST:     ATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: ATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

EST: gi|88211936|gb|CI211576.1|CI211576

EST:     GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAG                         GATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT
genomic: GTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 1 RNA-Seqlibrary.

Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 73

TCAGGCCTGCTGAGTACAAGAGATCCAGGTTGTCTAGGAACCGCAGAACTGTGAACCGTCCCTATGGTGGAGTGCTCTCTGGAACTGCAGTTAGGGAAAGgtcagcataa ... tgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTTGAAAATACAGAAAACCAAGGACAAGTCAGCCTCAAAGTAGACAACTCTT

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atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

atttgattataacatgtatcttctgtcacctcacatgattcatattgcctcgcagGATCATTCGTGCTTTCTTGGTTGAAGAGCAGAAGATTGTGAAGAAAGTCTTGAAAATACAGAAAACCAAGGACAAGTCAGCCTCAAAGTAGACAACTCTT