1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgccccccttcaaaacttattcattcattttattcctgtgcataacattcgcatttgtgtatttttcttgatgatactctgttacaaattacaataatagGGAGAAGAAATTATTGTTATAGTTCCTTGGGATGAATGGTGGGCAATGGCACTCAAGGATTCGTCAAATCCTCAGATAGCCCTTCTACCACTACATCCTG
species | Oryza sativa |
transcript | LOC_Os09g22440.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGAGAAGGGTGAAGTTTGGGTTGCGGAATCAGGCTTTGAAAATGAAAAG GGAGAAGAAATTATTGTTATAGTTCCTTGGGATGAATGGTGGGCAATGGCAEST: gi|300216292|gb|HO088077.1|HO088077
genomic: ATGAGAAGGGTGAAGTTTGGGTTGCGGAATCAGGCTTTGAAAATGAAAAGgtatagtttg ... acaataatagGGAGAAGAAATTATTGTTATAGTTCCTTGGGATGAATGGTGGGCAATGGCA
EST: ATGAGAAGGGTGAAGTTTGGGTTGCGGAATCAGGCTTTGAAAATGAAAAG GGAGAAGAAATTATTGCTATAGTTCCTTGGGATGAATGGTGGGCAATGGCAEST: gi|58593324|gb|CF991632.1|CF991632
genomic: ATGAGAAGGGTGAAGTTTGGGTTGCGGAATCAGGCTTTGAAAATGAAAAGgtatagtttg ... acaataatagGGAGAAGAAATTATTGTTATAGTTCCTTGGGATGAATGGTGGGCAATGGCA
EST: GCGGAATCAGGCTTTGAAAATGAAAAG GGAGAAGAAATTATTGCTATAGTTCCTTGGGATGAATGGTGGGCAATGGCAEST: gi|29616537|gb|CB621549.1|CB621549
genomic: GCGGAATCAGGCTTTGAAAATGAAAAGgtatagtttg ... acaataatagGGAGAAGAAATTATTGTTATAGTTCCTTGGGATGAATGGTGGGCAATGGCA
EST: ATGAGAAGGGTGAAGTTTGGGTTGCGGAATCAGGATTTGAAAATGAAAAG GGAGAAGAAATTATTGCTATAGTTCCTTGGGATGAATGGTGGGCAATGGCA
genomic: ATGAGAAGGGTGAAGTTTGGGTTGCGGAATCAGGCTTTGAAAATGAAAAGgtatagtttg ... acaataatagGGAGAAGAAATTATTGTTATAGTTCCTTGGGATGAATGGTGGGCAATGGCA
cattcgcatttgtgtatttttcttgatgatactctgttacaaattacaataatagGGAGAAGAAATTATTGTTATAGTTCCTTGGGATGAATGGTGGGCAATGGCACTCAAGGATTCGTCAAATCCTCAGATAGCCCTTCTACCACTACATCCTG
tcttgat putative branch site (score: 34)
ttacaaattacaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccccccttcaaaacttattcattcattttattcctgtgcataacattcgcatttgtgtatttttcttgatgatactctgttacaaattacaataatagGGAGAAGAAATTATTGTTATAGTTCCTTGGGATGAATGGTGGGCAATGGCACTCAAGGATTCGTCAAATCCTCAGATAGCCCTTCTACCACTACATCCTG
- - -cccttca
- - - - - - - - - - -cattcat
- - - - - - - - - - - - - - - - - - -gtgcata
- - - - - - - - - - - - - - - - - - - - - - - - - gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttac