1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttgtcatgcactcatgctacacagtttccaatttgctgcaccatttctccaattttttttcttgtttattattgaatattcaacttttaacttgtgcagGTTCCATCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAAAATTAGATCATTTCCTGTGCGCAGATTGTGTCAAAGAAAATGGCACGAAGAGACCT
species | Oryza sativa |
transcript | LOC_Os09g21770.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGTATAACCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAGGACTG GTTCCAGCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAAAATTAGAEST: gi|33663380|gb|CF294347.1|CF294347
genomic: CCGTATAACCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAGGACTGgtaaatcact ... acttgtgcagGTTCCATCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAAAATTAGA
EST: CCGTATAACCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAGGACTG GTTCCATCCATCTTGTATGGGAATGACCATTGAGEST: gi|86256715|gb|CI061478.1|CI061478
genomic: CCGTATAACCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAGGACTGgtaaatcact ... acttgtgcagGTTCCATCCATCTTGTATGGGAATGACCATTGAG
EST: CCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAGGACTG GTTCCATCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAAAATTAGAEST: gi|29638119|gb|CB643128.1|CB643128
genomic: CCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAGGACTGgtaaatcact ... acttgtgcagGTTCCATCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAAAATTAGA
EST: CCGTATAACCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAGGACTG GTTCCATCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAAAATTAGAEST: gi|29638253|gb|CB643262.1|CB643262
genomic: CCGTATAACCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAGGACTGgtaaatcact ... acttgtgcagGTTCCATCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAAAATTAGA
EST: CCGTATAACCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAGGACTG GTTCCATCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAAAATTAGAEST: gi|33658502|gb|CF281115.1|CF281115
genomic: CCGTATAACCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAGGACTGgtaaatcact ... acttgtgcagGTTCCATCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAAAATTAGA
EST: CCGTATAACCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAGGACTG GTTCCATCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAAAATTAGAEST: gi|29638118|gb|CB643127.1|CB643127
genomic: CCGTATAACCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAGGACTGgtaaatcact ... acttgtgcagGTTCCATCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAAAATTAGA
EST: CCGTATAACCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAGGACTG GTTCCATCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAAAATTAGA
genomic: CCGTATAACCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAGGACTGgtaaatcact ... acttgtgcagGTTCCATCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAAAATTAGA
ttctccaattttttttcttgtttattattgaatattcaacttttaacttgtgcagGTTCCATCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAAAATTAGATCATTTCCTGTGCGCAGATTGTGTCAAAGAAAATGGCACGAAGAGACCT
ttttaac putative branch site (score: 42)
aattttttttcttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtcatgcactcatgctacacagtttccaatttgctgcaccatttctccaattttttttcttgtttattattgaatattcaacttttaacttgtgcagGTTCCATCCATCTTGTATGGGAATGACCATTGAGCAGGCCAAAAAATTAGATCATTTCCTGTGCGCAGATTGTGTCAAAGAAAATGGCACGAAGAGACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - tcatgca
- - - - - - -catgcta
- - - - - - - - - - - - - - - - - tgctgca