1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtattttacatattcttgatcctaccattaagttgataatataaataaaaaggaataatgcttgacattttttttttggtagGGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGGATGGTGTGGGTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGA
species | Oryza sativa |
transcript | LOC_Os09g13870.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGG GGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGGEST: gi|88998354|gb|CI038239.1|CI038239
genomic: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGGgtattttaca ... tttttggtagGGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGG
EST: AATTTACTTCGAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGG GGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGGEST: gi|29642303|gb|CB647310.1|CB647310
genomic: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGGgtattttaca ... tttttggtagGGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGG
EST: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGG GGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGGEST: gi|88691322|gb|CI733906.1|CI733906
genomic: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGGgtattttaca ... tttttggtagGGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGG
EST: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGG GGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGGEST: gi|700788|gb|D47079.1|D47079
genomic: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGGgtattttaca ... tttttggtagGGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGG
EST: AATTTACTTCAAAAAGAAGGATTTCTATGATTTGCACCATGGCATACTGG GGATCCAATACTCTGTGCT-ATAACTGCGGTAAEST: gi|29640276|gb|CB645285.1|CB645285
genomic: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGGgtattttaca ... tttttggtagGGATCCTATACTCTGTGCTTATAACTGCGGTAA
EST: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGG GGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGGEST: gi|29642638|gb|CB647645.1|CB647645
genomic: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGGgtattttaca ... tttttggtagGGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGG
EST: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGG GGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGGEST: gi|29671233|gb|CB667508.1|CB667508
genomic: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGGgtattttaca ... tttttggtagGGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGG
EST: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGG GGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGGEST: gi|300215590|gb|HO088216.1|HO088216
genomic: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGGgtattttaca ... tttttggtagGGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGG
EST: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGG GGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGGEST: gi|88691866|gb|CI733443.1|CI733443
genomic: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGGgtattttaca ... tttttggtagGGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGG
EST: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGG GGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGGEST: gi|88690889|gb|CI734968.1|CI734968
genomic: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGGgtattttaca ... tttttggtagGGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGG
EST: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGG GGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGG
genomic: AATTTACTTCAAAAAGAAGAATTTCTATGATTTGCACCATGGCATACTGGgtattttaca ... tttttggtagGGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGG
ttaagttgataatataaataaaaaggaataatgcttgacattttttttttggtagGGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGGATGGTGTGGGTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGA
gcttgac putative branch site (score: 33)
catttttttttt CT-rich tract
ttgataatataaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttacatattcttgatcctaccattaagttgataatataaataaaaaggaataatgcttgacattttttttttggtagGGATCCTATACTCTGTGCTTATAACTGCGGTAATCACAGATGCAATTAAGGATGGTGTGGGTCGTCCACGCCCAGATTTTTTCTGGCGCTGTTTCCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT