1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaattttttaatgttctgcactggtgcccagtgataactatgcaaccgcatataatcttagaaaaaccatctgtttcttggtttggttctcatacataatcactttgcagATGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCAATTGTTGGTGGTGTGGCATTGGCATCTCTTACTGAAGCTTCATTTAACTG
species | Oryza sativa |
transcript | LOC_Os09g12600.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTATGGAGCCTTTCTTTTCAGTTCTGCTTTCAGCACTTTTCCTCGGAGAG ATGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCAATTGTTGGTGGTGTGEST: gi|66920409|gb|CX107257.1|CX107257
genomic: CTATGGAGCCTTTCTTTTCAGTTCTGCTTTCAGCACTTTTCCTCGGAGAGgtaatttttt ... cactttgcagATGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCAATTGTTGGTGGTGTG
EST: CTATGGAGCCTTTCTTTTCAGTTCTGCTTTCAGCACTTTTCCTCGGAGAG ATGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCAATTGTTGGTGGTGTGEST: gi|58672784|gb|CK061470.1|CK061470
genomic: CTATGGAGCCTTTCTTTTCAGTTCTGCTTTCAGCACTTTTCCTCGGAGAGgtaatttttt ... cactttgcagATGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCAATTGTTGGTGGTGTG
EST: CTATGGAGCCTTTCTTTTCAGTTCTGCTTTCAGCACTTTTCCTCGGAGAG ATGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCAATTGTTGGTGGTGTG
genomic: CTATGGAGCCTTTCTTTTCAGTTCTGCTTTCAGCACTTTTCCTCGGAGAGgtaatttttt ... cactttgcagATGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCAATTGTTGGTGGTGTG
tcttagaaaaaccatctgtttcttggtttggttctcatacataatcactttgcagATGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCAATTGTTGGTGGTGTGGCATTGGCATCTCTTACTGAAGCTTCATTTAACTG
tcacttt CT-rich tract
atacataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttttaatgttctgcactggtgcccagtgataactatgcaaccgcatataatcttagaaaaaccatctgtttcttggtttggttctcatacataatcactttgcagATGCCTACTCCTTTTGTTGTATTGTCTCTTGTTCCAATTGTTGGTGGTGTGGCATTGGCATCTCTTACTGAAGCTTCATTTAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC