1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagttgatctcattcacgaagtgtatcattatagatgttctggtggaaacacttaattctcattctcatcttcagGCACTGAACATATTTGAGACAAGCTTGAGGCGTGGGAAGTTTGACGAATCACGAAA
species | Oryza sativa |
transcript | LOC_Os09g10600.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCTCTTGCTGCAGCTGGTGCCGAGATTCTTGTTGGTACATGGGTACCT GCACTGAACATATTTGAGACEST: gi|58658677|gb|CK047357.1|CK047357
genomic: AAGCTCTTGCTGCAGCTGGTGCCGAGATTCTTGTTGGTACATGGGTACCTgtaagttgat ... tcatcttcagGCACTGAACATATTTGAGAC
EST: AAGCTCTTGCTGCAGCTGGTGCCGAGATTCTTGTTGGTACATGGGTACCT GCACTGAACATATTTGAGACAAGCTTGAGGCGTGGGAAGTTTGACGAATCAEST: gi|29670466|gb|CB666741.1|CB666741
genomic: AAGCTCTTGCTGCAGCTGGTGCCGAGATTCTTGTTGGTACATGGGTACCTgtaagttgat ... tcatcttcagGCACTGAACATATTTGAGACAAGCTTGAGGCGTGGGAAGTTTGACGAATCA
EST: AAGCTCTTGCTGCAGCTGGTGCCGAGATTCTTGTTGGTACATGGGTACCT GCACTGAACATATTTGAGACAAGCTTGAGGCGTGGGAAGTTTGACGAATCAEST: gi|58655118|gb|CK043798.1|CK043798
genomic: AAGCTCTTGCTGCAGCTGGTGCCGAGATTCTTGTTGGTACATGGGTACCTgtaagttgat ... tcatcttcagGCACTGAACATATTTGAGACAAGCTTGAGGCGTGGGAAGTTTGACGAATCA
EST: AAGCTCTTGCTGCAGCTGGTGCCGAGATTCTTGTTGGTACATGGGTACCT GCACTGAACATATTTGAGACAAGCTTGAGGCGTGGGAAGTTTEST: gi|29640101|gb|CB645110.1|CB645110
genomic: AAGCTCTTGCTGCAGCTGGTGCCGAGATTCTTGTTGGTACATGGGTACCTgtaagttgat ... tcatcttcagGCACTGAACATATTTGAGACAAGCTTGAGGCGTGGGAAGTTT
EST: AAGCTCTTGCTGCAGCTGGTGCCGAGATTCTTGTTGGTACATGGGTACCT GCACTGAACATATTTGAGACAAGCTTGAGGCGTGGGAAGTTTGACGAATCA
genomic: AAGCTCTTGCTGCAGCTGGTGCCGAGATTCTTGTTGGTACATGGGTACCTgtaagttgat ... tcatcttcagGCACTGAACATATTTGAGACAAGCTTGAGGCGTGGGAAGTTTGACGAATCA
gtgtatcattatagatgttctggtggaaacacttaattctcattctcatcttcagGCACTGAACATATTTGAGACAAGCTTGAGGCGTGGGAAGTTTGACGAATCACGAAA
acttaat putative branch site (score: 38)
ttctcattctcatctt CT-rich tract
attatagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgatctcattcacgaagtgtatcattatagatgttctggtggaaacacttaattctcattctcatcttcagGCACTGAACATATTTGAGACAAGCTTGAGGCGTGGGAAGTTTGACGAATCACGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT