Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgtcatttttctttctttgatccagtgtatcgctcccttcgtatgcttacctttgttagtacatttgtctttcagAATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACA

Basic information

species Oryza sativa
transcript LOC_Os08g45240.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33684394|gb|CF312633.1|CF312633
EST:     AAAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAG                         AATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAG
genomic: AAAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAGgtttgtgtca ... tgtctttcagAATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAG
EST: gi|40488236|gb|BX898806.1|BX898806
EST:     AAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAG                         AATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAG
genomic: AAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAGgtttgtgtca ... tgtctttcagAATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAG
EST: gi|89184670|gb|CI007095.1|CI007095
EST:     AAAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAG                         AATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAG
genomic: AAAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAGgtttgtgtca ... tgtctttcagAATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAG
EST: gi|89173728|gb|CI041621.1|CI041621
EST:     AAAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAG                         AATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAG
genomic: AAAGCAATTGGAAAGAGAGGACCGATGTTGATGCTCTAGAAAGACAGAAGgtttgtgtca ... tgtctttcagAATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccagtgtatcgctcccttcgtatgcttacctttgttagtacatttgtctttcagAATCACATCCAGAAGAAACCTAAAATGCCCAAGAAAAGTATCCTTCACAAGTAAAGCTATATTAGCCCTACTAAGCGCCATCCATGTAAACA
                       tgcttac  putative branch site (score: 2)
                                           tttgtctttc  putative PPT
                               tttgtta  TA-rich tract