1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtactaatatcctgcaagatgctatctttcttgtcactactctctaatgcatttctttgctatttagGGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATG
species | Oryza sativa |
transcript | LOC_Os08g44930.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCTGGACAGAATG GGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGEST: gi|427716|gb|D23851.1|D23851
genomic: GAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCTGGACAGAATGgtactaatat ... tgctatttagGGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAG
EST: GAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCTGGACAGAATG GGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGEST: gi|88976228|gb|CI024445.1|CI024445
genomic: GAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCTGGACAGAATGgtactaatat ... tgctatttagGGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAG
EST: GAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCTGGACAGAATG GGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGEST: gi|88484451|gb|CI421722.1|CI421722
genomic: GAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCTGGACAGAATGgtactaatat ... tgctatttagGGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAG
EST: GAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCTGGACAGAATG GGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAG
genomic: GAGATATACATGAAGAAGTGGAGAATCATAACCGAATGCTGGACAGAATGgtactaatat ... tgctatttagGGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAG
tgcaagatgctatctttcttgtcactactctctaatgcatttctttgctatttagGGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATG
ctctaat putative branch site (score: 3)
tttctttgctattt putative PPT
atttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactaatatcctgcaagatgctatctttcttgtcactactctctaatgcatttctttgctatttagGGTAATGATATGGATGCTTCCAGAGGATTTCTATCTGGAACGGTGGACAAGTTTAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG