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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatgcttcatcttttctctctttccataaaagacatgtattgttcagacccaataatcttcttctgggtattctctcatgctatagctaacttaatttgtaccgtccattcaattgttgctgtattaattctgcctcaacttcagCTGCCCATTCTGCCGAAAG

Basic information

species Oryza sativa
transcript LOC_Os08g44400.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58590549|gb|CF988857.1|CF988857
EST:     GGCAGTGTCCTCGACCAGAAAAGCCTATCGAGATTGTACGAGTTTGAAGG                         CTGCCCATTCTGCCGAAAG
genomic: GGCAGTGTCCTCGACCAGAAAAGCCTATCGAGATT-TACGAGTTTGAAGGgtatatatgc ... tcaacttcagCTGCCCATTCTGCCGAAAG
EST: gi|29687876|gb|CB684151.1|CB684151
EST:     GGGCAGTGTCCTCGACCAGAAAAGCCTATCGAGATTTACGAGTTTGAAGG                         CTGCCCATTCTGCCGAAAG
genomic: GGGCAGTGTCCTCGACCAGAAAAGCCTATCGAGATTTACGAGTTTGAAGGgtatatatgc ... tcaacttcagCTGCCCATTCTGCCGAAAG
EST: gi|58593409|gb|CF991717.1|CF991717
EST:     GGGCAGTGTCCTCGACCAGAAAAGCCTATCGAGATTTACGAGTTTGAAGG                         CTGCCCATTCTGCCGAAAG
genomic: GGGCAGTGTCCTCGACCAGAAAAGCCTATCGAGATTTACGAGTTTGAAGGgtatatatgc ... tcaacttcagCTGCCCATTCTGCCGAAAG
EST: gi|27548923|gb|CA767585.2|CA767585
EST:     CGAGATTTACGAGTTTGAAGG                         CTGCCCATTCTGCCGAAAG
genomic: CGAGATTTACGAGTTTGAAGGgtatatatgc ... tcaacttcagCTGCCCATTCTGCCGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaatttgtaccgtccattcaattgttgctgtattaattctgcctcaacttcagCTGCCCATTCTGCCGAAAG
                                tattaat  putative branch site (score: 2)
                                      ttctgcctc  CT-rich tract
                              tgtattaatt  TA-rich tract